RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 LARP6Q9BRS8 491 aaKnown RBP9.8□□□□□ -0.84
HDAC9-216ENST00000446646 POLKQ9UBT6 870 aa9.8□□□□□ -0.84
HDAC9-216ENST00000446646 CACNA1SQ13698 1873 aa9.8□□□□□ -0.84
HDAC9-216ENST00000446646 TRIOBPQ9H2D6 2365 aa9.8□□□□□ -0.84
HDAC9-216ENST00000446646 FZD9O00144 591 aa9.79□□□□□ -0.84
HDAC9-216ENST00000446646 CANXP27824 592 aaKnown RBP9.79□□□□□ -0.84
HDAC9-216ENST00000446646 PDE6BP35913 854 aa9.79□□□□□ -0.84
HDAC9-216ENST00000446646 PNMA8AQ86V59 439 aaPredicted RBP9.79□□□□□ -0.84
HDAC9-216ENST00000446646 SPNS2Q8IVW8 549 aa9.79□□□□□ -0.84
HDAC9-216ENST00000446646 ZNF687Q8N1G0 1237 aa9.79□□□□□ -0.84
HDAC9-216ENST00000446646 LHX6Q9UPM6 363 aa9.79□□□□□ -0.84
HDAC9-216ENST00000446646 SCNN1DP51172 638 aa9.78□□□□□ -0.84
HDAC9-216ENST00000446646 BRPF1P55201 1214 aaPredicted RBP9.78□□□□□ -0.84
HDAC9-216ENST00000446646 FKBP4Q02790 459 aaKnown RBP eCLIP9.78□□□□□ -0.84
HDAC9-216ENST00000446646 HABP4Q5JVS0 413 aaKnown RBP9.78□□□□□ -0.84
HDAC9-216ENST00000446646 STYK1Q6J9G0 422 aa9.78□□□□□ -0.84
HDAC9-216ENST00000446646 LGR6Q9HBX8 967 aa9.78□□□□□ -0.84
HDAC9-216ENST00000446646 GJA3Q9Y6H8 435 aa9.78□□□□□ -0.84
HDAC9-216ENST00000446646 ANKRD26Q9UPS8 1709 aa9.77□□□□□ -0.85
HDAC9-216ENST00000446646 TBC1D12O60347 775 aa9.77□□□□□ -0.85
HDAC9-216ENST00000446646 CELF2O95319 508 aaKnown RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 HSP90AB1P08238 724 aaKnown RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 TNNT2P45379 298 aaPredicted RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 EIF5P55010 431 aaKnown RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 PLEKHO1Q53GL0 409 aaPredicted RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 CNKSR1Q969H4 720 aa9.77□□□□□ -0.85
HDAC9-216ENST00000446646 DDX27Q96GQ7 796 aaKnown RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 GLIS2Q9BZE0 524 aaPredicted RBP9.77□□□□□ -0.85
HDAC9-216ENST00000446646 TBC1D2BQ9UPU7 963 aa9.77□□□□□ -0.85
HDAC9-216ENST00000446646 KIF20BQ96Q89 1820 aa9.77□□□□□ -0.85
HDAC9-216ENST00000446646 VCANP13611 3396 aa9.76□□□□□ -0.85
HDAC9-216ENST00000446646 CA12O43570 354 aa9.76□□□□□ -0.85
HDAC9-216ENST00000446646 IARSP41252 1262 aaKnown RBP9.76□□□□□ -0.85
HDAC9-216ENST00000446646 CCDC93Q567U6 631 aa9.76□□□□□ -0.85
HDAC9-216ENST00000446646 GPC2Q8N158 579 aa9.76□□□□□ -0.85
HDAC9-216ENST00000446646 MASTLQ96GX5 879 aa9.76□□□□□ -0.85
HDAC9-216ENST00000446646 SNED1Q8TER0 1413 aa9.75□□□□□ -0.85
HDAC9-216ENST00000446646 PRKCSHP14314 528 aaPredicted RBP9.75□□□□□ -0.85
HDAC9-216ENST00000446646 FXR1P51114 621 aaKnown RBP eCLIP9.75□□□□□ -0.85
HDAC9-216ENST00000446646 NBR1Q14596 966 aa9.75□□□□□ -0.85
HDAC9-216ENST00000446646 SYNE4Q8N205 404 aa9.75□□□□□ -0.85
HDAC9-216ENST00000446646 MMRN1Q13201 1228 aa9.74□□□□□ -0.85
HDAC9-216ENST00000446646 CNBD1Q8NA66 436 aa9.74□□□□□ -0.85
HDAC9-216ENST00000446646 ZNF408Q9H9D4 720 aa9.74□□□□□ -0.85
HDAC9-216ENST00000446646 SLC52A2Q9HAB3 445 aa9.74□□□□□ -0.85
HDAC9-216ENST00000446646 HPS5Q9UPZ3 1129 aa9.74□□□□□ -0.85
HDAC9-216ENST00000446646 FAM155AB1AL88 458 aaPredicted RBP9.73□□□□□ -0.85
HDAC9-216ENST00000446646 CAMTA2O94983 1202 aa9.73□□□□□ -0.85
HDAC9-216ENST00000446646 SOGA3Q5TF21 947 aa9.73□□□□□ -0.85
HDAC9-216ENST00000446646 OXER1Q8TDS5 423 aa9.73□□□□□ -0.85
HDAC9-216ENST00000446646 PDZRN3Q9UPQ7 1066 aa9.73□□□□□ -0.85
HDAC9-216ENST00000446646 ZNF330Q9Y3S2 320 aaPredicted RBP9.73□□□□□ -0.85
HDAC9-216ENST00000446646 UNC80Q8N2C7 3258 aa9.73□□□□□ -0.85
HDAC9-216ENST00000446646 TRPM7Q96QT4 1865 aa9.72□□□□□ -0.85
HDAC9-216ENST00000446646 SHTN1A0MZ66 631 aa9.72□□□□□ -0.85
HDAC9-216ENST00000446646 C1orf141Q5JVX7 400 aa9.72□□□□□ -0.85
HDAC9-216ENST00000446646 RNF186Q9NXI6 227 aa9.72□□□□□ -0.85
HDAC9-216ENST00000446646 ARFGEF2Q9Y6D5 1785 aa9.71□□□□□ -0.85
HDAC9-216ENST00000446646 TRPA1O75762 1119 aa9.71□□□□□ -0.86
HDAC9-216ENST00000446646 PIP4K2AP48426 406 aaPredicted RBP9.71□□□□□ -0.86
HDAC9-216ENST00000446646 HIRAP54198 1017 aaPredicted RBP9.71□□□□□ -0.86
HDAC9-216ENST00000446646 MFSD10Q14728 455 aa9.71□□□□□ -0.86
HDAC9-216ENST00000446646 AMOTQ4VCS5 1084 aa9.71□□□□□ -0.86
HDAC9-216ENST00000446646 SETDB2Q96T68 719 aa9.71□□□□□ -0.86
HDAC9-216ENST00000446646 SCN7AQ01118 1682 aa9.71□□□□□ -0.86
HDAC9-216ENST00000446646 KLRG2A4D1S0 409 aaPredicted RBP9.7□□□□□ -0.86
HDAC9-216ENST00000446646 A1BGP04217 495 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 NPR1P16066 1061 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 LMOD1P29536 600 aaPredicted RBP9.7□□□□□ -0.86
HDAC9-216ENST00000446646 ST5P78524 1137 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 KIF23Q02241 960 aaPredicted RBP9.7□□□□□ -0.86
HDAC9-216ENST00000446646 USP50Q70EL3 339 aaPredicted RBP9.7□□□□□ -0.86
HDAC9-216ENST00000446646 CTU1Q7Z7A3 348 aaKnown RBP9.7□□□□□ -0.86
HDAC9-216ENST00000446646 RTKN2Q8IZC4 609 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 NBPF15Q8N660 670 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 TRPM4Q8TD43 1214 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 HHIPL1Q96JK4 782 aa9.7□□□□□ -0.86
HDAC9-216ENST00000446646 NPHP1O15259 732 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 RNMTO43148 476 aaKnown RBP9.69□□□□□ -0.86
HDAC9-216ENST00000446646 MRC1P22897 1456 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 EIF6P56537 245 aaKnown RBP9.69□□□□□ -0.86
HDAC9-216ENST00000446646 HUNKP57058 714 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 NOGQ13253 232 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 SULT6B1Q6IMI4 303 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 ANKRD13DQ6ZTN6 518 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 SCN11AQ9UI33 1791 aa9.69□□□□□ -0.86
HDAC9-216ENST00000446646 BCORQ6W2J9 1755 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 A0A087WZG4 1122 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 FAM177BA6PVY3 158 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 DLL1O00548 723 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 TPRNQ4KMQ1 711 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 JDP2Q8WYK2 163 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 ZNF496Q96IT1 587 aaPredicted RBP9.68□□□□□ -0.86
HDAC9-216ENST00000446646 PSMD1Q99460 953 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 GPRC5DQ9NZD1 345 aa9.68□□□□□ -0.86
HDAC9-216ENST00000446646 SPTBN5Q9NRC6 3674 aaKnown RBP9.68□□□□□ -0.86
HDAC9-216ENST00000446646 KIAA0100Q14667 2235 aaKnown RBP9.68□□□□□ -0.86
HDAC9-216ENST00000446646 PBX2P40425 430 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 GMPSP49915 693 aaPredicted RBP9.67□□□□□ -0.86
HDAC9-216ENST00000446646 AKAP4Q5JQC9 854 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms