RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 PLIN1O60240 522 aa20.26■□□□□ 0.83
USP39-205ENST00000442708 EPHA10Q5JZY3 1008 aa20.26■□□□□ 0.83
USP39-205ENST00000442708 C7orf43Q8WVR3 580 aa20.26■□□□□ 0.83
USP39-205ENST00000442708 RBM17Q96I25 401 aaKnown RBP20.26■□□□□ 0.83
USP39-205ENST00000442708 KAZALD1Q96I82 304 aa20.26■□□□□ 0.83
USP39-205ENST00000442708 CCDC85AQ96PX6 553 aaPredicted RBP20.26■□□□□ 0.83
USP39-205ENST00000442708 CRAMP1Q96RY5 1269 aa20.26■□□□□ 0.83
USP39-205ENST00000442708 PLA2G12BQ9BX93 195 aa20.26■□□□□ 0.83
USP39-205ENST00000442708 C9orf78Q9NZ63 289 aaPredicted RBP20.26■□□□□ 0.83
USP39-205ENST00000442708 ZNF219Q9P2Y4 722 aaPredicted RBP20.26■□□□□ 0.83
USP39-205ENST00000442708 CTSWP56202 376 aa20.25■□□□□ 0.83
USP39-205ENST00000442708 FOXO4P98177 505 aa20.25■□□□□ 0.83
USP39-205ENST00000442708 OLFM4Q6UX06 510 aa20.25■□□□□ 0.83
USP39-205ENST00000442708 TTLL11Q8NHH1 800 aa20.25■□□□□ 0.83
USP39-205ENST00000442708 SUCLG2Q96I99 432 aa20.25■□□□□ 0.83
USP39-205ENST00000442708 DCAF8L1A6NGE4 600 aa20.24■□□□□ 0.83
USP39-205ENST00000442708 C21orf2O43822 256 aa20.24■□□□□ 0.83
USP39-205ENST00000442708 TMEM57Q8N5G2 664 aa20.24■□□□□ 0.83
USP39-205ENST00000442708 SEC31BQ9NQW1 1179 aa20.24■□□□□ 0.83
USP39-205ENST00000442708 SPEF2Q9C093 1822 aa20.23■□□□□ 0.83
USP39-205ENST00000442708 HSP90B1P14625 803 aaKnown RBP20.23■□□□□ 0.83
USP39-205ENST00000442708 ALDH1B1P30837 517 aa20.23■□□□□ 0.83
USP39-205ENST00000442708 FER1L6Q2WGJ9 1857 aa20.23■□□□□ 0.83
USP39-205ENST00000442708 CSF1RP07333 972 aa20.22■□□□□ 0.83
USP39-205ENST00000442708 DDX46Q7L014 1031 aaKnown RBP20.22■□□□□ 0.83
USP39-205ENST00000442708 DZIP1LQ8IYY4 767 aaKnown RBP20.22■□□□□ 0.83
USP39-205ENST00000442708 ZNF784Q8NCA9 323 aaPredicted RBP20.22■□□□□ 0.83
USP39-205ENST00000442708 CELF1Q92879 486 aaKnown RBP20.22■□□□□ 0.83
USP39-205ENST00000442708 GREM2Q9H772 168 aa20.22■□□□□ 0.83
USP39-205ENST00000442708 GRAPQ13588 217 aa20.21■□□□□ 0.83
USP39-205ENST00000442708 CCDC152Q4G0S7 254 aa20.21■□□□□ 0.83
USP39-205ENST00000442708 GRAPLQ8TC17 118 aaPredicted RBP20.21■□□□□ 0.83
USP39-205ENST00000442708 PANK1Q8TE04 598 aa20.21■□□□□ 0.83
USP39-205ENST00000442708 MEIS3Q99687 375 aa20.21■□□□□ 0.83
USP39-205ENST00000442708 SNED1Q8TER0 1413 aa20.2■□□□□ 0.82
USP39-205ENST00000442708 PPEF1O14829 653 aaPredicted RBP20.2■□□□□ 0.82
USP39-205ENST00000442708 GRIN3BO60391 1043 aa20.2■□□□□ 0.82
USP39-205ENST00000442708 ARHGAP27Q6ZUM4 889 aa20.2■□□□□ 0.82
USP39-205ENST00000442708 ANKRD44Q8N8A2 993 aa20.2■□□□□ 0.82
USP39-205ENST00000442708 SBF1O95248 1867 aa20.2■□□□□ 0.82
USP39-205ENST00000442708 RTL9Q8NET4 1388 aa20.2■□□□□ 0.82
USP39-205ENST00000442708 LRRC37AA6NMS7 1700 aa20.19■□□□□ 0.82
USP39-205ENST00000442708 FAM161AQ3B820 660 aa20.19■□□□□ 0.82
USP39-205ENST00000442708 C20orf194Q5TEA3 1177 aa20.19■□□□□ 0.82
USP39-205ENST00000442708 LMBR1LQ6UX01 489 aa20.19■□□□□ 0.82
USP39-205ENST00000442708 BICC1Q9H694 974 aaKnown RBP20.19■□□□□ 0.82
USP39-205ENST00000442708 UTRNP46939 3433 aa20.19■□□□□ 0.82
USP39-205ENST00000442708 CCDC88AQ3V6T2 1871 aa20.18■□□□□ 0.82
USP39-205ENST00000442708 RASSF7Q02833 373 aa20.18■□□□□ 0.82
USP39-205ENST00000442708 FTSJ3Q8IY81 847 aaKnown RBP20.18■□□□□ 0.82
USP39-205ENST00000442708 NFKBIEO00221 500 aa20.17■□□□□ 0.82
USP39-205ENST00000442708 BBOX1O75936 387 aa20.17■□□□□ 0.82
USP39-205ENST00000442708 PRELPP51888 382 aa20.17■□□□□ 0.82
USP39-205ENST00000442708 RPS8P62241 208 aaKnown RBP20.17■□□□□ 0.82
USP39-205ENST00000442708 UBTFL1P0CB47 393 aaPredicted RBP20.16■□□□□ 0.82
USP39-205ENST00000442708 ITGA6P23229 1130 aa20.16■□□□□ 0.82
USP39-205ENST00000442708 RABL6Q3YEC7 729 aaPredicted RBP20.16■□□□□ 0.82
USP39-205ENST00000442708 ATP6V0A2Q9Y487 856 aa20.16■□□□□ 0.82
USP39-205ENST00000442708 CCDC93Q567U6 631 aa20.15■□□□□ 0.82
USP39-205ENST00000442708 ITPRIPQ8IWB1 547 aa20.15■□□□□ 0.82
USP39-205ENST00000442708 CHMP3Q9Y3E7 222 aa20.15■□□□□ 0.82
USP39-205ENST00000442708 LRRFIP2Q9Y608 721 aaKnown RBP20.15■□□□□ 0.82
USP39-205ENST00000442708 LTBP1Q14766 1721 aa20.15■□□□□ 0.82
USP39-205ENST00000442708 ANKRD18AQ8IVF6 992 aa20.14■□□□□ 0.81
USP39-205ENST00000442708 SP8Q8IXZ3 490 aa20.14■□□□□ 0.81
USP39-205ENST00000442708 ZBTB7BO15156 539 aaPredicted RBP20.13■□□□□ 0.81
USP39-205ENST00000442708 GNAI3P08754 354 aa20.13■□□□□ 0.81
USP39-205ENST00000442708 COG6Q9Y2V7 657 aa20.13■□□□□ 0.81
USP39-205ENST00000442708 DUOX1Q9NRD9 1551 aa20.12■□□□□ 0.81
USP39-205ENST00000442708 RRP1P56182 461 aaKnown RBP20.12■□□□□ 0.81
USP39-205ENST00000442708 IFIT5Q13325 482 aaKnown RBP20.12■□□□□ 0.81
USP39-205ENST00000442708 SOGA3Q5TF21 947 aa20.12■□□□□ 0.81
USP39-205ENST00000442708 ZNF594Q96JF6 807 aaPredicted RBP20.12■□□□□ 0.81
USP39-205ENST00000442708 CDC5LQ99459 802 aaKnown RBP20.12■□□□□ 0.81
USP39-205ENST00000442708 A0A1B0GUL6 1792 aa20.12■□□□□ 0.81
USP39-205ENST00000442708 LTBP3Q9NS15 1303 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 ANKRD18BA2A2Z9 1011 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 MS4A1P11836 297 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 PDE3AQ14432 1141 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 MVPQ14764 893 aaKnown RBP20.11■□□□□ 0.81
USP39-205ENST00000442708 CC2D2BQ6DHV5 1058 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 TMC4Q7Z404 712 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 RTKN2Q8IZC4 609 aa20.11■□□□□ 0.81
USP39-205ENST00000442708 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.11■□□□□ 0.81
USP39-205ENST00000442708 DICER1Q9UPY3 1922 aaKnown RBP20.1■□□□□ 0.81
USP39-205ENST00000442708 GPSM2P81274 684 aa20.1■□□□□ 0.81
USP39-205ENST00000442708 FKBP4Q02790 459 aaKnown RBP eCLIP20.1■□□□□ 0.81
USP39-205ENST00000442708 TAOK3Q9H2K8 898 aa20.1■□□□□ 0.81
USP39-205ENST00000442708 BSDC1Q9NW68 430 aaPredicted RBP20.1■□□□□ 0.81
USP39-205ENST00000442708 RFX5P48382 616 aaPredicted RBP20.09■□□□□ 0.81
USP39-205ENST00000442708 C1QTNF8P60827 252 aa20.09■□□□□ 0.81
USP39-205ENST00000442708 CCDC57Q2TAC2 916 aa20.09■□□□□ 0.81
USP39-205ENST00000442708 KLHDC4Q8TBB5 520 aa20.09■□□□□ 0.81
USP39-205ENST00000442708 C1orf115Q9H7X2 142 aa20.09■□□□□ 0.81
USP39-205ENST00000442708 ZNF277Q9NRM2 450 aaPredicted RBP20.09■□□□□ 0.81
USP39-205ENST00000442708 MINPP1Q9UNW1 487 aa20.09■□□□□ 0.81
USP39-205ENST00000442708 COL4A5P29400 1685 aa20.08■□□□□ 0.81
USP39-205ENST00000442708 WTIPA6NIX2 430 aaPredicted RBP20.08■□□□□ 0.81
USP39-205ENST00000442708 GNAI2P04899 355 aa20.08■□□□□ 0.81
USP39-205ENST00000442708 IGHMBP2P38935 993 aaKnown RBP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms