RNA–Protein interactions for RNA: ENST00000438700.7

PTCHD3-201, Transcript of patched domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCHD3, Length 2,529 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-201ENST00000438700 PTPN12Q05209 780 aaKnown RBP16.74■□□□□ 0.27
PTCHD3-201ENST00000438700 ANKRD36CQ5JPF3 1778 aa16.74■□□□□ 0.27
PTCHD3-201ENST00000438700 AACSQ86V21 672 aa16.74■□□□□ 0.27
PTCHD3-201ENST00000438700 COPRSQ9NQ92 184 aa16.74■□□□□ 0.27
PTCHD3-201ENST00000438700 CHMP3Q9Y3E7 222 aa16.74■□□□□ 0.27
PTCHD3-201ENST00000438700 HSPA4P34932 840 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 ITPK1Q13572 414 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 NUP98P52948 1817 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 CICQ96RK0 1608 aaPredicted RBP16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 AFF2P51816 1311 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 TTC41PQ6P2S7 1318 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 RAD50Q92878 1312 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 CRKLP46109 303 aaKnown RBP16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 TRIM28Q13263 835 aaKnown RBP16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 CCDC87Q9NVE4 849 aa16.73■□□□□ 0.27
PTCHD3-201ENST00000438700 USP42Q9H9J4 1324 aaKnown RBP16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 MCM2P49736 904 aa16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 INTS5Q6P9B9 1019 aaKnown RBP16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 DZIP3Q86Y13 1208 aaKnown RBP16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 SMARCC1Q92922 1105 aaPredicted RBP16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 ECHDC1Q9NTX5 307 aa16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 TBC1D2BQ9UPU7 963 aa16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 MYH14Q7Z406 1995 aaKnown RBP16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 GPTP24298 496 aa16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 DIAPH3Q9NSV4 1193 aa16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 ISY1Q9ULR0 285 aaKnown RBP16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 RREB1Q92766 1687 aa16.72■□□□□ 0.27
PTCHD3-201ENST00000438700 NCLP19338 710 aaKnown RBP16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 EAF2Q96CJ1 260 aaPredicted RBP16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 LSG1Q9H089 658 aaKnown RBP16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 KLHL40Q2TBA0 621 aa16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 KIAA1211Q6ZU35 1233 aa16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 GPATCH3Q96I76 525 aa16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 CCDC8Q9H0W5 538 aaPredicted RBP16.71■□□□□ 0.27
PTCHD3-201ENST00000438700 NASPP49321 788 aaPredicted RBP16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 EIF5P55010 431 aaKnown RBP16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 HSP90AB3PQ58FF7 597 aa16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 FAM89AQ96GI7 184 aa16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 GJD4Q96KN9 370 aaPredicted RBP16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 TLR7Q9NYK1 1049 aaKnown RBP16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 COL5A3P25940 1745 aaPredicted RBP16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 PCCAP05165 728 aaPredicted RBP16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 FAM182BQ5T319 152 aa16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 PTF1AQ7RTS3 328 aa16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 RASEFQ8IZ41 740 aa16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 LMBRD1Q9NUN5 540 aa16.7■□□□□ 0.26
PTCHD3-201ENST00000438700 CUL4AQ13619 759 aa16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 NLRP10Q86W26 655 aa16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 LARP6Q9BRS8 491 aaKnown RBP16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 SNX14Q9Y5W7 946 aa16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 ERVV-1B6SEH8 477 aa16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 PRPF40AO75400 957 aaKnown RBP16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 ZBTB38Q8NAP3 1195 aaPredicted RBP16.69■□□□□ 0.26
PTCHD3-201ENST00000438700 TFCP2Q12800 502 aa16.68■□□□□ 0.26
PTCHD3-201ENST00000438700 CAVIN1Q6NZI2 390 aaKnown RBP16.68■□□□□ 0.26
PTCHD3-201ENST00000438700 BTAF1O14981 1849 aa16.68■□□□□ 0.26
PTCHD3-201ENST00000438700 IL17RAQ96F46 866 aa16.68■□□□□ 0.26
PTCHD3-201ENST00000438700 ZNF831Q5JPB2 1677 aa16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 NHSQ6T4R5 1651 aa16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 CPA1P15085 419 aa16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 PTH1RQ03431 593 aa16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 SYNE4Q8N205 404 aa16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 ATRNO75882 1429 aa16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 EPB41L2O43491 1005 aaKnown RBP16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 FOXD4L6Q3SYB3 417 aaPredicted RBP16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 FOXD4L3Q6VB84 417 aaPredicted RBP16.67■□□□□ 0.26
PTCHD3-201ENST00000438700 KCNQ4P56696 695 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 ZNF594Q96JF6 807 aaPredicted RBP16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 RBM10P98175 930 aaKnown RBP16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 TNNI3KQ59H18 835 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 RUFY2Q8WXA3 655 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 EVI5LQ96CN4 794 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 INTS4Q96HW7 963 aaKnown RBP16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 PPP1R9BQ96SB3 815 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 BOLA2Q9H3K6 86 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 TRPC5Q9UL62 973 aaPredicted RBP16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 FPGT-TNNI3KV9GXZ4 949 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 UBN2Q6ZU65 1347 aa16.66■□□□□ 0.26
PTCHD3-201ENST00000438700 CCDC173Q0VFZ6 552 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 LINC00116Q8NCU8 138 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 FAM227BQ96M60 508 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 CCDC85AQ96PX6 553 aaPredicted RBP16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 PLA2G12BQ9BX93 195 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 CDHR2Q9BYE9 1310 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 BRD1O95696 1058 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 CASTP20810 708 aaKnown RBP16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 PRPF40BQ6NWY9 871 aaKnown RBP16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 ATG9AQ7Z3C6 839 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 TRMT112Q9UI30 125 aaKnown RBP16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 MYH3P11055 1940 aa16.65■□□□□ 0.26
PTCHD3-201ENST00000438700 AK2P54819 239 aa16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 ZNF34Q8IZ26 560 aa16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 GPT2Q8TD30 523 aa16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 CAMTA2O94983 1202 aa16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 CCDC57Q2TAC2 916 aa16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 ILDR1Q86SU0 546 aaPredicted RBP16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 ZSCAN30Q86W11 494 aa16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 RBM27Q9P2N5 1060 aaKnown RBP16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 DBNLQ9UJU6 430 aaKnown RBP16.64■□□□□ 0.25
PTCHD3-201ENST00000438700 LRRC24Q50LG9 513 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms