RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 C7orf43Q8WVR3 580 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 SSH1Q8WYL5 1049 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 RNF181Q9P0P0 153 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 ZBTB12Q9Y330 459 aaPredicted RBP14.56□□□□□ -0.08
COL28A1-203ENST00000435823 ABCC4O15439 1325 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 FER1L6Q2WGJ9 1857 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 SF3B3Q15393 1217 aaKnown RBP14.55□□□□□ -0.08
COL28A1-203ENST00000435823 RTKN2Q8IZC4 609 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 SMC4Q9NTJ3 1288 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 PTPRCP08575 1304 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 CDHR2Q9BYE9 1310 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 LTBP3Q9NS15 1303 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 SBF1O95248 1867 aa14.55□□□□□ -0.08
COL28A1-203ENST00000435823 F6X3S4 739 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 PITPNM1O00562 1244 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 PDE8AO60658 829 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 GRAPQ13588 217 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 GCKRQ14397 625 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 GRIPAP1Q4V328 841 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 GRAPLQ8TC17 118 aaPredicted RBP14.54□□□□□ -0.08
COL28A1-203ENST00000435823 JARID2Q92833 1246 aaPredicted RBP14.54□□□□□ -0.08
COL28A1-203ENST00000435823 BCL2L13Q9BXK5 485 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 ZBED9Q6R2W3 1325 aa14.54□□□□□ -0.08
COL28A1-203ENST00000435823 BBOX1O75936 387 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 FKBP4Q02790 459 aaKnown RBP eCLIP14.53□□□□□ -0.08
COL28A1-203ENST00000435823 EVX2Q03828 476 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 CCDC152Q4G0S7 254 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 BEND3Q5T5X7 828 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 SLC4A10Q6U841 1118 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 OLFM4Q6UX06 510 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 UTRNP46939 3433 aa14.53□□□□□ -0.08
COL28A1-203ENST00000435823 ZC3H4Q9UPT8 1303 aaKnown RBP14.52□□□□□ -0.08
COL28A1-203ENST00000435823 H7C1W4 665 aa14.52□□□□□ -0.09
COL28A1-203ENST00000435823 UBE3BQ7Z3V4 1068 aa14.52□□□□□ -0.09
COL28A1-203ENST00000435823 TMC4Q7Z404 712 aa14.52□□□□□ -0.09
COL28A1-203ENST00000435823 SRCIN1Q9C0H9 1055 aa14.52□□□□□ -0.09
COL28A1-203ENST00000435823 ATP6V0A2Q9Y487 856 aa14.52□□□□□ -0.09
COL28A1-203ENST00000435823 CCDC88AQ3V6T2 1871 aa14.51□□□□□ -0.09
COL28A1-203ENST00000435823 ALDH1L1O75891 902 aa14.51□□□□□ -0.09
COL28A1-203ENST00000435823 ZNF526Q8TF50 670 aaPredicted RBP14.51□□□□□ -0.09
COL28A1-203ENST00000435823 GPBP1L1Q9HC44 474 aaPredicted RBP14.51□□□□□ -0.09
COL28A1-203ENST00000435823 PRELPP51888 382 aa14.5□□□□□ -0.09
COL28A1-203ENST00000435823 CTSWP56202 376 aa14.5□□□□□ -0.09
COL28A1-203ENST00000435823 SP8Q8IXZ3 490 aa14.5□□□□□ -0.09
COL28A1-203ENST00000435823 PSMD1Q99460 953 aa14.5□□□□□ -0.09
COL28A1-203ENST00000435823 TIAM2Q8IVF5 1701 aa14.49□□□□□ -0.09
COL28A1-203ENST00000435823 MYH3P11055 1940 aa14.49□□□□□ -0.09
COL28A1-203ENST00000435823 DICER1Q9UPY3 1922 aaKnown RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 RARSP54136 660 aaKnown RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 CELF1Q92879 486 aaKnown RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 CCDC85AQ96PX6 553 aaPredicted RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 ZNF277Q9NRM2 450 aaPredicted RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 C9orf78Q9NZ63 289 aaPredicted RBP14.49□□□□□ -0.09
COL28A1-203ENST00000435823 TAF1P21675 1872 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 KDM2BQ8NHM5 1336 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 KIF16BQ96L93 1317 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 GRM8O00222 908 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 IARSP41252 1262 aaKnown RBP14.48□□□□□ -0.09
COL28A1-203ENST00000435823 BRPF1P55201 1214 aaPredicted RBP14.48□□□□□ -0.09
COL28A1-203ENST00000435823 CASP7P55210 303 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 RPS8P62241 208 aaKnown RBP14.48□□□□□ -0.09
COL28A1-203ENST00000435823 LHX8Q68G74 356 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 DPP8Q6V1X1 898 aaPredicted RBP14.48□□□□□ -0.09
COL28A1-203ENST00000435823 MPNDQ8N594 471 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 SUPT20HQ8NEM7 779 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 PLA2G12BQ9BX93 195 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 API5Q9BZZ5 524 aaKnown RBP14.48□□□□□ -0.09
COL28A1-203ENST00000435823 NOB1Q9ULX3 412 aaKnown RBP14.48□□□□□ -0.09
COL28A1-203ENST00000435823 SNED1Q8TER0 1413 aa14.48□□□□□ -0.09
COL28A1-203ENST00000435823 ANKRD18AQ8IVF6 992 aa14.47□□□□□ -0.09
COL28A1-203ENST00000435823 TTLL11Q8NHH1 800 aa14.47□□□□□ -0.09
COL28A1-203ENST00000435823 CDC5LQ99459 802 aaKnown RBP14.47□□□□□ -0.09
COL28A1-203ENST00000435823 SEC31BQ9NQW1 1179 aa14.47□□□□□ -0.09
COL28A1-203ENST00000435823 DPY19L2Q6NUT2 758 aa14.46□□□□□ -0.09
COL28A1-203ENST00000435823 JDP2Q8WYK2 163 aa14.46□□□□□ -0.09
COL28A1-203ENST00000435823 LRRC37AA6NMS7 1700 aa14.46□□□□□ -0.1
COL28A1-203ENST00000435823 RTL9Q8NET4 1388 aa14.46□□□□□ -0.1
COL28A1-203ENST00000435823 GLTPD2A6NH11 291 aa14.45□□□□□ -0.1
COL28A1-203ENST00000435823 IPO8O15397 1037 aaKnown RBP14.45□□□□□ -0.1
COL28A1-203ENST00000435823 SLC51AQ86UW1 340 aa14.45□□□□□ -0.1
COL28A1-203ENST00000435823 LARGE2Q8N3Y3 721 aa14.45□□□□□ -0.1
COL28A1-203ENST00000435823 RTFDC1Q9BY42 306 aaPredicted RBP14.45□□□□□ -0.1
COL28A1-203ENST00000435823 VPS33BQ9H267 617 aa14.45□□□□□ -0.1
COL28A1-203ENST00000435823 GREM2Q9H772 168 aa14.45□□□□□ -0.1
COL28A1-203ENST00000435823 PLSCR2Q9NRY7 297 aa14.45□□□□□ -0.1
COL28A1-203ENST00000435823 NSFL1CQ9UNZ2 370 aaKnown RBP14.45□□□□□ -0.1
COL28A1-203ENST00000435823 PPIP5K2O43314 1243 aa14.44□□□□□ -0.1
COL28A1-203ENST00000435823 CSF1RP07333 972 aa14.44□□□□□ -0.1
COL28A1-203ENST00000435823 IGHMBP2P38935 993 aaKnown RBP14.44□□□□□ -0.1
COL28A1-203ENST00000435823 CCT4P50991 539 aaKnown RBP14.44□□□□□ -0.1
COL28A1-203ENST00000435823 ARHGAP45Q92619 1136 aa14.44□□□□□ -0.1
COL28A1-203ENST00000435823 CHMP3Q9Y3E7 222 aa14.44□□□□□ -0.1
COL28A1-203ENST00000435823 ITGA6P23229 1130 aa14.43□□□□□ -0.1
COL28A1-203ENST00000435823 FAM161AQ3B820 660 aa14.43□□□□□ -0.1
COL28A1-203ENST00000435823 NIM1KQ8IY84 436 aa14.43□□□□□ -0.1
COL28A1-203ENST00000435823 COL4A1P02462 1669 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 UTYO14607 1347 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 ANKRD18BA2A2Z9 1011 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 C6orf229H3BNL8 230 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms