RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RBM10P98175 930 aaKnown RBP12.84□□□□□ -0.35
CUX1-205ENST00000425244 GPATCH3Q96I76 525 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 SUCLG2Q96I99 432 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 GDPD2Q9HCC8 539 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 ECHDC1Q9NTX5 307 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 TBC1D2BQ9UPU7 963 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 LAMB4A4D0S4 1761 aa12.84□□□□□ -0.35
CUX1-205ENST00000425244 SYCE3A1L190 88 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 GRM8O00222 908 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 CLCN1P35523 988 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 CCDC173Q0VFZ6 552 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 SMIM5Q71RC9 77 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 PLBD2Q8NHP8 589 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 TMEM63CQ9P1W3 806 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 ATRNO75882 1429 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 NEURL1BA8MQ27 555 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 ITPK1Q13572 414 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 NAP1L5Q96NT1 182 aaPredicted RBP12.83□□□□□ -0.36
CUX1-205ENST00000425244 RBSNQ9H1K0 784 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 BICC1Q9H694 974 aaKnown RBP12.83□□□□□ -0.36
CUX1-205ENST00000425244 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.83□□□□□ -0.36
CUX1-205ENST00000425244 TTC41PQ6P2S7 1318 aa12.83□□□□□ -0.36
CUX1-205ENST00000425244 DTNBO60941 627 aa12.82□□□□□ -0.36
CUX1-205ENST00000425244 MTX1Q13505 466 aa12.82□□□□□ -0.36
CUX1-205ENST00000425244 UBE3BQ7Z3V4 1068 aa12.82□□□□□ -0.36
CUX1-205ENST00000425244 CASTP20810 708 aaKnown RBP12.82□□□□□ -0.36
CUX1-205ENST00000425244 AK2P54819 239 aa12.82□□□□□ -0.36
CUX1-205ENST00000425244 G3BP1Q13283 466 aaKnown RBP eCLIP12.82□□□□□ -0.36
CUX1-205ENST00000425244 KIF6Q6ZMV9 814 aa12.82□□□□□ -0.36
CUX1-205ENST00000425244 ERC1Q8IUD2 1116 aa12.82□□□□□ -0.36
CUX1-205ENST00000425244 CCDC8Q9H0W5 538 aaPredicted RBP12.82□□□□□ -0.36
CUX1-205ENST00000425244 A0A087WZG4 1122 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 GPTP24298 496 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 CRKLP46109 303 aaKnown RBP12.81□□□□□ -0.36
CUX1-205ENST00000425244 GCKRQ14397 625 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 PRPF40BQ6NWY9 871 aaKnown RBP12.81□□□□□ -0.36
CUX1-205ENST00000425244 KLHDC4Q8TBB5 520 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 RUFY2Q8WXA3 655 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 HDAC5Q9UQL6 1122 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 PTH1RQ03431 593 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.81□□□□□ -0.36
CUX1-205ENST00000425244 KCNJ4P48050 445 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 KAZALD1Q96I82 304 aa12.81□□□□□ -0.36
CUX1-205ENST00000425244 WDR33Q9C0J8 1336 aaKnown RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 FAM177BA6PVY3 158 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 EPB41L2O43491 1005 aaKnown RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 MBD3O95983 291 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 HLFQ16534 295 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 RUFY3Q7L099 469 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 SMARCC1Q92922 1105 aaPredicted RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 JAKMIP1Q96N16 626 aaKnown RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 USP42Q9H9J4 1324 aaKnown RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 TRIM37O94972 964 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 KRT27Q7Z3Y8 459 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 RNF214Q8ND24 703 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 EAF2Q96CJ1 260 aaPredicted RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 IL17RAQ96F46 866 aa12.8□□□□□ -0.36
CUX1-205ENST00000425244 TLR7Q9NYK1 1049 aaKnown RBP12.8□□□□□ -0.36
CUX1-205ENST00000425244 ONECUT3O60422 494 aaPredicted RBP12.79□□□□□ -0.36
CUX1-205ENST00000425244 DZIP3Q86Y13 1208 aaKnown RBP12.79□□□□□ -0.36
CUX1-205ENST00000425244 CCDC87Q9NVE4 849 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 LIMCH1Q9UPQ0 1083 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 CHMP3Q9Y3E7 222 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 THSD7AQ9UPZ6 1657 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 GADD45BO75293 160 aaPredicted RBP12.79□□□□□ -0.36
CUX1-205ENST00000425244 SASH1O94885 1247 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 ZNF772Q68DY9 489 aaPredicted RBP12.79□□□□□ -0.36
CUX1-205ENST00000425244 EVI5LQ96CN4 794 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 FAM227BQ96M60 508 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 TTC14Q96N46 770 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 PPP1R9BQ96SB3 815 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 BOLA2Q9H3K6 86 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 ARFGEF2Q9Y6D5 1785 aa12.79□□□□□ -0.36
CUX1-205ENST00000425244 ADCK5Q3MIX3 580 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 INTS5Q6P9B9 1019 aaKnown RBP12.78□□□□□ -0.36
CUX1-205ENST00000425244 SMC3Q9UQE7 1217 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 LRSAM1Q6UWE0 723 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 USP48Q86UV5 1035 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 CCDC83Q8IWF9 413 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 LINC00116Q8NCU8 138 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 PDRG1Q9NUG6 133 aa12.78□□□□□ -0.36
CUX1-205ENST00000425244 CCNL1Q9UK58 526 aaPredicted RBP12.78□□□□□ -0.36
CUX1-205ENST00000425244 AFDNP55196 1824 aaKnown RBP12.78□□□□□ -0.36
CUX1-205ENST00000425244 LARGE1O95461 756 aa12.77□□□□□ -0.36
CUX1-205ENST00000425244 NMIQ13287 307 aaPredicted RBP12.77□□□□□ -0.36
CUX1-205ENST00000425244 EPHA10Q5JZY3 1008 aa12.77□□□□□ -0.36
CUX1-205ENST00000425244 CCDC85AQ96PX6 553 aaPredicted RBP12.77□□□□□ -0.36
CUX1-205ENST00000425244 FSD1Q9BTV5 496 aa12.77□□□□□ -0.36
CUX1-205ENST00000425244 CWC25Q9NXE8 425 aaPredicted RBP12.77□□□□□ -0.36
CUX1-205ENST00000425244 RPAP1Q9BWH6 1393 aaPredicted RBP12.77□□□□□ -0.37
CUX1-205ENST00000425244 RBM6P78332 1123 aaKnown RBP12.77□□□□□ -0.37
CUX1-205ENST00000425244 MAP3K15Q6ZN16 1313 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 SYNE4Q8N205 404 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 FAM89AQ96GI7 184 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 CNPY2Q9Y2B0 182 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.76□□□□□ -0.37
CUX1-205ENST00000425244 CYP46A1Q9Y6A2 500 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 CCDC171Q6TFL3 1326 aa12.76□□□□□ -0.37
CUX1-205ENST00000425244 ZKSCAN1P17029 563 aaPredicted RBP12.76□□□□□ -0.37
CUX1-205ENST00000425244 SYT1P21579 422 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms