RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 CALR3Q96L12 384 aaKnown RBP11.54□□□□□ -0.56
USP54-205ENST00000424265 SLIT3O75094 1523 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 HIP1O00291 1037 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 COPS6Q7L5N1 327 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 RNF214Q8ND24 703 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 TNPO1Q92973 898 aaKnown RBP11.54□□□□□ -0.56
USP54-205ENST00000424265 LRRCC1Q9C099 1032 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 PXDNQ92626 1479 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 PPP2R5AQ15172 486 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 MPHOSPH8Q99549 860 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 TRMT112Q9UI30 125 aaKnown RBP11.53□□□□□ -0.56
USP54-205ENST00000424265 CIZ1Q9ULV3 898 aaPredicted RBP11.53□□□□□ -0.56
USP54-205ENST00000424265 SPATA31A5Q5VU36 1347 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 SPATA31A7Q8IWB4 1347 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 TOPAZ1Q8N9V7 1692 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 GIGYF1O75420 1035 aaPredicted RBP11.53□□□□□ -0.56
USP54-205ENST00000424265 CNNM1Q9NRU3 951 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 MAP2K2P36507 400 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 NBPF11Q86T75 865 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 AKAP2Q9Y2D5 859 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 SRGAP3O43295 1099 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 RAD51AP2Q09MP3 1159 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 DZIP3Q86Y13 1208 aaKnown RBP11.53□□□□□ -0.56
USP54-205ENST00000424265 NBPF9Q3BBW0 867 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 MCTP1Q6DN14 999 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 CCDC191Q8NCU4 936 aa11.53□□□□□ -0.56
USP54-205ENST00000424265 SEPT12Q8IYM1 358 aa11.52□□□□□ -0.56
USP54-205ENST00000424265 JRKLQ9Y4A0 524 aa11.52□□□□□ -0.56
USP54-205ENST00000424265 COL3A1P02461 1466 aaPredicted RBP11.52□□□□□ -0.57
USP54-205ENST00000424265 CAPN2P17655 700 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 USP8P40818 1118 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 ZRSR1Q15695 479 aaKnown RBP11.52□□□□□ -0.57
USP54-205ENST00000424265 ZNF496Q96IT1 587 aaPredicted RBP11.52□□□□□ -0.57
USP54-205ENST00000424265 ANTXR1Q9H6X2 564 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 DONSONQ9NYP3 566 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 LEKR1Q6ZMV7 388 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 KIF1BPQ96EK5 621 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 CDC5LQ99459 802 aaKnown RBP11.52□□□□□ -0.57
USP54-205ENST00000424265 C22orf23Q9BZE7 217 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 STK32BQ9NY57 414 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 CEP126Q9P2H0 1117 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 ST5P78524 1137 aa11.52□□□□□ -0.57
USP54-205ENST00000424265 ZNF710Q8N1W2 664 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 TSPYL6Q8N831 410 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 ZNF513Q8N8E2 541 aaPredicted RBP11.51□□□□□ -0.57
USP54-205ENST00000424265 FBXO41Q8TF61 875 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 ZBTB3Q9H5J0 574 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 REC8O95072 547 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 CCDC158Q5M9N0 1113 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 TRAPPC3LQ5T215 181 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 INTS3Q68E01 1043 aaKnown RBP11.51□□□□□ -0.57
USP54-205ENST00000424265 CCDC112Q8NEF3 446 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 TPM3P06753 285 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 GUCY2CP25092 1073 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 HNRNPH2P55795 449 aaKnown RBP11.51□□□□□ -0.57
USP54-205ENST00000424265 IFIT5Q13325 482 aaKnown RBP11.51□□□□□ -0.57
USP54-205ENST00000424265 SETDB2Q96T68 719 aa11.51□□□□□ -0.57
USP54-205ENST00000424265 ANKRD18BA2A2Z9 1011 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 GRM8O00222 908 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 KRBA2Q6ZNG9 492 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 RNF217Q8TC41 542 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.5□□□□□ -0.57
USP54-205ENST00000424265 HEG1Q9ULI3 1381 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 TULP2O00295 520 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 CYP27B1O15528 508 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 KLHL40Q2TBA0 621 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 METTL22Q9BUU2 404 aaPredicted RBP11.5□□□□□ -0.57
USP54-205ENST00000424265 SH3BP1Q9Y3L3 701 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 CNTROBQ8N137 903 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 JARID2Q92833 1246 aaPredicted RBP11.5□□□□□ -0.57
USP54-205ENST00000424265 CXorf56Q9H5V9 222 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 DRC7Q8IY82 874 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 PIK3R5Q8WYR1 880 aa11.5□□□□□ -0.57
USP54-205ENST00000424265 UTP14AQ9BVJ6 771 aaKnown RBP11.5□□□□□ -0.57
USP54-205ENST00000424265 MED1Q15648 1581 aaPredicted RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 F6X3S4 739 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 SLFN14P0C7P3 912 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 NKX1-1Q15270 411 aaPredicted RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 CCDC152Q4G0S7 254 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 COL5A2P05997 1499 aaPredicted RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 MAP2P11137 1827 aaKnown RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 HDAC1Q13547 482 aaPredicted RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 NRKQ7Z2Y5 1582 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 DCAF8L1A6NGE4 600 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 RIOK3O14730 519 aaKnown RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 IL6STP40189 918 aaPredicted RBP11.49□□□□□ -0.57
USP54-205ENST00000424265 TTLL5Q6EMB2 1281 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 TPTE2Q6XPS3 522 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 AMOTL1Q8IY63 956 aa11.49□□□□□ -0.57
USP54-205ENST00000424265 LOC102724428A0A0B4J2F2 783 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 SIK1P57059 783 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 TBC1D2BQ9UPU7 963 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 RDXP35241 583 aaKnown RBP11.48□□□□□ -0.57
USP54-205ENST00000424265 DNAJC10Q8IXB1 793 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 NEUROD6Q96NK8 337 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 TSPY26PQ9H489 355 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 SPINK5Q9NQ38 1064 aaPredicted RBP11.48□□□□□ -0.57
USP54-205ENST00000424265 PIBF1Q8WXW3 757 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 LNPKQ9C0E8 428 aa11.48□□□□□ -0.57
USP54-205ENST00000424265 GNPATO15228 680 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms