RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 NUCB1Q02818 461 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 MTX1Q13505 466 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 HSP90AB4PQ58FF6 505 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 UBE3BQ7Z3V4 1068 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 CCDC191Q8NCU4 936 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 LINC00116Q8NCU8 138 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 AK7Q96M32 723 aa7.39□□□□□ -1.23
HMGB3-202ENST00000419110 CDHR2Q9BYE9 1310 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 ERVV-1B6SEH8 477 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 ATP5J2-PTCD1G3V325 749 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 RGL2O15211 777 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 GNPATO15228 680 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 NBPF7P0C2Y1 421 aaPredicted RBP7.38□□□□□ -1.23
HMGB3-202ENST00000419110 OS9Q13438 667 aaPredicted RBP7.38□□□□□ -1.23
HMGB3-202ENST00000419110 FAM182BQ5T319 152 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 GIGYF2Q6Y7W6 1299 aaKnown RBP7.38□□□□□ -1.23
HMGB3-202ENST00000419110 CHD1LQ86WJ1 897 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 ERC1Q8IUD2 1116 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 SIRT2Q8IXJ6 389 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 SUCLG2Q96I99 432 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 ISCA1Q9BUE6 129 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 LNPKQ9C0E8 428 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 BOLA1Q9Y3E2 137 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 MAST2Q6P0Q8 1798 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 EP400Q96L91 3159 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 LRRC37AA6NMS7 1700 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 NRXN2Q9P2S2 1712 aa7.38□□□□□ -1.23
HMGB3-202ENST00000419110 ZNF609O15014 1411 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 PNMA6EA0A0J9YXQ4 647 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 HSP90B1P14625 803 aaKnown RBP7.37□□□□□ -1.23
HMGB3-202ENST00000419110 EIF5P55010 431 aaKnown RBP7.37□□□□□ -1.23
HMGB3-202ENST00000419110 ATP8B2P98198 1209 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 TCIRG1Q13488 830 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 SLC27A3Q5K4L6 730 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 RC3H1Q5TC82 1133 aaKnown RBP7.37□□□□□ -1.23
HMGB3-202ENST00000419110 ANKRD45Q5TZF3 282 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 INTS5Q6P9B9 1019 aaKnown RBP7.37□□□□□ -1.23
HMGB3-202ENST00000419110 PPP1R42Q7Z4L9 355 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 EFCAB3Q8N7B9 438 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 SSH3Q8TE77 659 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 LRRCC1Q9C099 1032 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 BICC1Q9H694 974 aaKnown RBP7.37□□□□□ -1.23
HMGB3-202ENST00000419110 DCTPP1Q9H773 170 aa7.37□□□□□ -1.23
HMGB3-202ENST00000419110 COL11A2P13942 1736 aaPredicted RBP7.37□□□□□ -1.23
HMGB3-202ENST00000419110 ANKRD31Q8N7Z5 1873 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 DLEC1Q9Y238 1755 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 APBB1O00213 710 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 RIOK3O14730 519 aaKnown RBP7.36□□□□□ -1.23
HMGB3-202ENST00000419110 RAB11FIP3O75154 756 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 TRIM37O94972 964 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 CAMTA2O94983 1202 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 PCCAP05165 728 aaPredicted RBP7.36□□□□□ -1.23
HMGB3-202ENST00000419110 GPTP24298 496 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 TRIM28Q13263 835 aaKnown RBP7.36□□□□□ -1.23
HMGB3-202ENST00000419110 FAM161AQ3B820 660 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 PARP10Q53GL7 1025 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 KIF1BPQ96EK5 621 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 GPATCH3Q96I76 525 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 EXOC6BQ9Y2D4 811 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 CHMP3Q9Y3E7 222 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 RTCBQ9Y3I0 505 aaKnown RBP7.36□□□□□ -1.23
HMGB3-202ENST00000419110 DOCK2Q92608 1830 aa7.36□□□□□ -1.23
HMGB3-202ENST00000419110 RIC1Q4ADV7 1423 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 CARMIL3Q8ND23 1372 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 AOX1Q06278 1338 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 UBN2Q6ZU65 1347 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 TAF1P21675 1872 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 DUOX1Q9NRD9 1551 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 SURF6O75683 361 aaKnown RBP7.35□□□□□ -1.23
HMGB3-202ENST00000419110 RABL6Q3YEC7 729 aaPredicted RBP7.35□□□□□ -1.23
HMGB3-202ENST00000419110 PTF1AQ7RTS3 328 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 NLRP10Q86W26 655 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 SKAP1Q86WV1 359 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 ZBTB38Q8NAP3 1195 aaPredicted RBP7.35□□□□□ -1.23
HMGB3-202ENST00000419110 MARVELD3Q96A59 401 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 TBC1D2BQ9UPU7 963 aa7.35□□□□□ -1.23
HMGB3-202ENST00000419110 SH3TC1Q8TE82 1336 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 USP42Q9H9J4 1324 aaKnown RBP7.34□□□□□ -1.23
HMGB3-202ENST00000419110 EIF5BO60841 1220 aaKnown RBP7.34□□□□□ -1.23
HMGB3-202ENST00000419110 ZPR1O75312 459 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 RPS6KA4O75676 772 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 PDE4AP27815 886 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 SSFA2P28290 1259 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 CASP7P55210 303 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 CTSWP56202 376 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 TAF7LQ5H9L4 462 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 RNF25Q96BH1 459 aaPredicted RBP7.34□□□□□ -1.23
HMGB3-202ENST00000419110 PLA2G12BQ9BX93 195 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 TSHZ2Q9NRE2 1034 aa7.34□□□□□ -1.23
HMGB3-202ENST00000419110 TRMT112Q9UI30 125 aaKnown RBP7.34□□□□□ -1.23
HMGB3-202ENST00000419110 RTL9Q8NET4 1388 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 KIAA1551Q9HCM1 1747 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 CCDC88AQ3V6T2 1871 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 H7C1W4 665 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 PHF14O94880 888 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 MX1P20591 662 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 G3BP1Q13283 466 aaKnown RBP eCLIP7.33□□□□□ -1.24
HMGB3-202ENST00000419110 HLFQ16534 295 aa7.33□□□□□ -1.24
HMGB3-202ENST00000419110 BMP2KLQ5H9B9 411 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms