RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-205	ENST00000414879	MYO6	Q9UM54	1294 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	IRS4	O14654	1257 aa	Predicted RBP	13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	TMEM266	Q2M3C6	531 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	FAM43A	Q8N2R8	423 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	KIAA1210	Q9ULL0	1709 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	CAMSAP1	Q5T5Y3	1602 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	SDS	P20132	328 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	ESR2	Q92731	530 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	ESYT1	Q9BSJ8	1104 aa		13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	UPF3B	Q9BZI7	483 aa	Known RBP	13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	CDR1	P51861	262 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	MET	P08581	1390 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	ANXA1	P04083	346 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	PPFIBP1	Q86W92	1011 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	TRIM35	Q9UPQ4	493 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	MPHOSPH10	O00566	681 aa	Known RBP	13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	IARS	P41252	1262 aa	Known RBP	13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	ODF2	Q5BJF6	829 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	MNS1	Q8NEH6	495 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	CALM1	P0DP23	149 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	CALM2	P0DP24	149 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	CALM3	P0DP25	149 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	SYCP1	Q15431	976 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	SNX21	Q969T3	373 aa		13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	DDX19A	Q9NUU7	478 aa	Known RBP	13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	PPRC1	Q5VV67	1664 aa	Known RBP	13.93	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	FGFR1OP	O95684	399 aa	Known RBP	13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	SERPINC1	P01008	464 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	CEBPZ	Q03701	1054 aa	Known RBP	13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	TSPYL6	Q8N831	410 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	TMEM94	Q12767	1356 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	SH3TC1	Q8TE82	1336 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	TMEM67	Q5HYA8	995 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	LRRC27	Q9C0I9	530 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	MADD	Q8WXG6	1647 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZBTB7B	O15156	539 aa	Predicted RBP	13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	TRAPPC3L	Q5T215	181 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	CCAR2	Q8N163	923 aa	Known RBP	13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	KAT14	Q9H8E8	782 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	PARP3	Q9Y6F1	533 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	CFAP65	Q6ZU64	1925 aa	Known RBP	13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	USP6	P35125	1406 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	CCDC194	A0A1B0GVG4	234 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	KANK3	Q6NY19	840 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	PDILT	Q8N807	584 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	ANO10	Q9NW15	660 aa		13.92	□□□□□ -0.18
PTPRF-205	ENST00000414879	ACSBG1	Q96GR2	724 aa		13.91	□□□□□ -0.18
PTPRF-205	ENST00000414879	DNAI2	Q9GZS0	605 aa		13.91	□□□□□ -0.18
PTPRF-205	ENST00000414879	PAG1	Q9NWQ8	432 aa		13.91	□□□□□ -0.18
PTPRF-205	ENST00000414879	RICTOR	Q6R327	1708 aa		13.91	□□□□□ -0.18
PTPRF-205	ENST00000414879	PPP1R12B	O60237	982 aa	Predicted RBP	13.91	□□□□□ -0.18
PTPRF-205	ENST00000414879	CCDC183	Q5T5S1	534 aa		13.91	□□□□□ -0.18
PTPRF-205	ENST00000414879	TSPY2	A6NKD2	308 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	BAG4	O95429	457 aa	Known RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	NAA16	Q6N069	864 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	RNF113A	O15541	343 aa	Known RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	TMEM132A	Q24JP5	1023 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZNF592	Q92610	1267 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	ERCC4	Q92889	916 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	A2ML1	A8K2U0	1454 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	AGL	P35573	1532 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	PDE8A	O60658	829 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	POLD1	P28340	1107 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	NAP1L1	P55209	391 aa	Known RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	RBM17	Q96I25	401 aa	Known RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	HELLS	Q9NRZ9	838 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	RERE	Q9P2R6	1566 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	MTERF4	Q7Z6M4	381 aa	Known RBP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	CCDC148	Q8NFR7	591 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	DDX11	Q96FC9	970 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	DENND2A	Q9ULE3	1009 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	USP16	Q9Y5T5	823 aa		13.9	□□□□□ -0.18
PTPRF-205	ENST00000414879	MROH1	Q8NDA8	1641 aa		13.9	□□□□□ -0.19
PTPRF-205	ENST00000414879	TSPOAP1	O95153	1857 aa		13.9	□□□□□ -0.19
PTPRF-205	ENST00000414879	EYA2	O00167	538 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	TBC1D2	Q9BYX2	928 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	CYP7A1	P22680	504 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	METAP2	P50579	478 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	RNF214	Q8ND24	703 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	FLAD1	Q8NFF5	587 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	CCDC87	Q9NVE4	849 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	ADGRB3	O60242	1522 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	STK11IP	Q8N1F8	1099 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	MPHOSPH6	Q99547	160 aa	Known RBP	13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	GTPBP4	Q9BZE4	634 aa	Known RBP	13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	FBXO3	Q9UK99	471 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	EIF4A1	P60842	406 aa	Known RBP	13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	AMPD3	Q01432	767 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	CCDC96	Q2M329	555 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	OGFOD1	Q8N543	542 aa		13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.89	□□□□□ -0.19
PTPRF-205	ENST00000414879	STX6	O43752	255 aa		13.88	□□□□□ -0.19
PTPRF-205	ENST00000414879	NLRP5	P59047	1200 aa		13.88	□□□□□ -0.19
PTPRF-205	ENST00000414879	WTAP	Q15007	396 aa		13.88	□□□□□ -0.19
PTPRF-205	ENST00000414879	RTL9	Q8NET4	1388 aa		13.88	□□□□□ -0.19
PTPRF-205	ENST00000414879	CARD10	Q9BWT7	1032 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms