RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 SPEF2Q9C093 1822 aa12.03□□□□□ -0.48
RIF1-202ENST00000414861 NRXN2Q9P2S2 1712 aa12.03□□□□□ -0.48
RIF1-202ENST00000414861 POLRMTO00411 1230 aaKnown RBP12.03□□□□□ -0.48
RIF1-202ENST00000414861 SURF6O75683 361 aaKnown RBP12.03□□□□□ -0.48
RIF1-202ENST00000414861 LNPKQ9C0E8 428 aa12.03□□□□□ -0.48
RIF1-202ENST00000414861 GREM2Q9H772 168 aa12.03□□□□□ -0.48
RIF1-202ENST00000414861 PTPN12Q05209 780 aaKnown RBP12.02□□□□□ -0.48
RIF1-202ENST00000414861 ANKRD45Q5TZF3 282 aa12.02□□□□□ -0.48
RIF1-202ENST00000414861 NYXQ9GZU5 481 aa12.02□□□□□ -0.48
RIF1-202ENST00000414861 SIL1Q9H173 461 aa12.02□□□□□ -0.48
RIF1-202ENST00000414861 SMARCA5O60264 1052 aaPredicted RBP12.02□□□□□ -0.49
RIF1-202ENST00000414861 PDE4AP27815 886 aa12.02□□□□□ -0.49
RIF1-202ENST00000414861 ANKRD31Q8N7Z5 1873 aa12.02□□□□□ -0.49
RIF1-202ENST00000414861 CNBD1Q8NA66 436 aa12.02□□□□□ -0.49
RIF1-202ENST00000414861 ZNF594Q96JF6 807 aaPredicted RBP12.02□□□□□ -0.49
RIF1-202ENST00000414861 NOP58Q9Y2X3 529 aaKnown RBP12.02□□□□□ -0.49
RIF1-202ENST00000414861 GTF2E1P29083 439 aaPredicted RBP12.01□□□□□ -0.49
RIF1-202ENST00000414861 PRR5LQ6MZQ0 368 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 TPTE2Q6XPS3 522 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 CHD1LQ86WJ1 897 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 BCL11AQ9H165 835 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 COPRSQ9NQ92 184 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 LRP5O75197 1615 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 SERPINB2P05120 415 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 RGS3P49796 1198 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
RIF1-202ENST00000414861 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.01□□□□□ -0.49
RIF1-202ENST00000414861 MMP10P09238 476 aa12□□□□□ -0.49
RIF1-202ENST00000414861 ITGA6P23229 1130 aa12□□□□□ -0.49
RIF1-202ENST00000414861 SLC10A5Q5PT55 438 aa12□□□□□ -0.49
RIF1-202ENST00000414861 CCDC57Q2TAC2 916 aa12□□□□□ -0.49
RIF1-202ENST00000414861 NPHP1O15259 732 aa11.99□□□□□ -0.49
RIF1-202ENST00000414861 IFIT5Q13325 482 aaKnown RBP11.99□□□□□ -0.49
RIF1-202ENST00000414861 OTUD7AQ8TE49 926 aaPredicted RBP11.99□□□□□ -0.49
RIF1-202ENST00000414861 LRRCC1Q9C099 1032 aa11.99□□□□□ -0.49
RIF1-202ENST00000414861 SEC31BQ9NQW1 1179 aa11.99□□□□□ -0.49
RIF1-202ENST00000414861 SASH1O94885 1247 aa11.99□□□□□ -0.49
RIF1-202ENST00000414861 OS9Q13438 667 aaPredicted RBP11.99□□□□□ -0.49
RIF1-202ENST00000414861 RHPN1Q8TCX5 695 aa11.99□□□□□ -0.49
RIF1-202ENST00000414861 PUS3Q9BZE2 481 aaKnown RBP11.99□□□□□ -0.49
RIF1-202ENST00000414861 IL1RAPL2Q9NP60 686 aa11.99□□□□□ -0.49
RIF1-202ENST00000414861 LRRC24Q50LG9 513 aa11.98□□□□□ -0.49
RIF1-202ENST00000414861 ATG9AQ7Z3C6 839 aa11.98□□□□□ -0.49
RIF1-202ENST00000414861 C16orf71Q8IYS4 520 aaPredicted RBP11.98□□□□□ -0.49
RIF1-202ENST00000414861 RTL9Q8NET4 1388 aa11.98□□□□□ -0.49
RIF1-202ENST00000414861 RIC1Q4ADV7 1423 aa11.98□□□□□ -0.49
RIF1-202ENST00000414861 RAB11FIP3O75154 756 aa11.98□□□□□ -0.49
RIF1-202ENST00000414861 HSP90B1P14625 803 aaKnown RBP11.98□□□□□ -0.49
RIF1-202ENST00000414861 SF3B3Q15393 1217 aaKnown RBP11.98□□□□□ -0.49
RIF1-202ENST00000414861 CCDC152Q4G0S7 254 aa11.98□□□□□ -0.49
RIF1-202ENST00000414861 COL11A2P13942 1736 aaPredicted RBP11.98□□□□□ -0.49
RIF1-202ENST00000414861 ANKRD18BA2A2Z9 1011 aa11.97□□□□□ -0.49
RIF1-202ENST00000414861 G3BP1Q13283 466 aaKnown RBP eCLIP11.97□□□□□ -0.49
RIF1-202ENST00000414861 HSP90AB4PQ58FF6 505 aa11.97□□□□□ -0.49
RIF1-202ENST00000414861 KIF1BPQ96EK5 621 aa11.97□□□□□ -0.49
RIF1-202ENST00000414861 A0A1B0GUL6 1792 aa11.97□□□□□ -0.49
RIF1-202ENST00000414861 ST5P78524 1137 aa11.97□□□□□ -0.49
RIF1-202ENST00000414861 R3HDM1Q15032 1099 aaKnown RBP11.97□□□□□ -0.49
RIF1-202ENST00000414861 NLRP3Q96P20 1036 aa11.97□□□□□ -0.49
RIF1-202ENST00000414861 EYA2O00167 538 aa11.96□□□□□ -0.49
RIF1-202ENST00000414861 TAF7LQ5H9L4 462 aa11.96□□□□□ -0.49
RIF1-202ENST00000414861 PARP3Q9Y6F1 533 aa11.96□□□□□ -0.49
RIF1-202ENST00000414861 SALL3Q9BXA9 1300 aa11.95□□□□□ -0.5
RIF1-202ENST00000414861 TFCP2Q12800 502 aa11.95□□□□□ -0.5
RIF1-202ENST00000414861 ERC1Q8IUD2 1116 aa11.95□□□□□ -0.5
RIF1-202ENST00000414861 PSDA5PKW4 1024 aaPredicted RBP11.95□□□□□ -0.5
RIF1-202ENST00000414861 CIAO1O76071 339 aa11.95□□□□□ -0.5
RIF1-202ENST00000414861 ZBTB7AO95365 584 aa11.95□□□□□ -0.5
RIF1-202ENST00000414861 CRY2Q49AN0 593 aa11.95□□□□□ -0.5
RIF1-202ENST00000414861 ZBTB47Q9UFB7 747 aaPredicted RBP11.95□□□□□ -0.5
RIF1-202ENST00000414861 GOLGB1Q14789 3259 aaKnown RBP11.94□□□□□ -0.5
RIF1-202ENST00000414861 TSHZ3Q63HK5 1081 aa11.94□□□□□ -0.5
RIF1-202ENST00000414861 LDHAL6AQ6ZMR3 332 aa11.94□□□□□ -0.5
RIF1-202ENST00000414861 SLC51AQ86UW1 340 aa11.94□□□□□ -0.5
RIF1-202ENST00000414861 PLEKHM2Q8IWE5 1019 aa11.94□□□□□ -0.5
RIF1-202ENST00000414861 CELF1Q92879 486 aaKnown RBP11.94□□□□□ -0.5
RIF1-202ENST00000414861 RIPOR2Q9Y4F9 1068 aa11.94□□□□□ -0.5
RIF1-202ENST00000414861 IL15P40933 162 aaPredicted RBP11.94□□□□□ -0.5
RIF1-202ENST00000414861 SLC16A10Q8TF71 515 aa11.94□□□□□ -0.5
RIF1-202ENST00000414861 EAF2Q96CJ1 260 aaPredicted RBP11.94□□□□□ -0.5
RIF1-202ENST00000414861 ZNF609O15014 1411 aa11.93□□□□□ -0.5
RIF1-202ENST00000414861 CACNA1SQ13698 1873 aa11.93□□□□□ -0.5
RIF1-202ENST00000414861 CNNM1Q9NRU3 951 aa11.93□□□□□ -0.5
RIF1-202ENST00000414861 TLR7Q9NYK1 1049 aaKnown RBP11.93□□□□□ -0.5
RIF1-202ENST00000414861 AACSQ86V21 672 aa11.93□□□□□ -0.5
RIF1-202ENST00000414861 CLASRPQ8N2M8 674 aaKnown RBP11.93□□□□□ -0.5
RIF1-202ENST00000414861 CDC5LQ99459 802 aaKnown RBP11.93□□□□□ -0.5
RIF1-202ENST00000414861 FBXO3Q9UK99 471 aa11.93□□□□□ -0.5
RIF1-202ENST00000414861 KLRG2A4D1S0 409 aaPredicted RBP11.92□□□□□ -0.5
RIF1-202ENST00000414861 IGHMBP2P38935 993 aaKnown RBP11.92□□□□□ -0.5
RIF1-202ENST00000414861 TNNI3KQ59H18 835 aa11.92□□□□□ -0.5
RIF1-202ENST00000414861 VGLL2Q8N8G2 317 aa11.92□□□□□ -0.5
RIF1-202ENST00000414861 MPHOSPH8Q99549 860 aa11.92□□□□□ -0.5
RIF1-202ENST00000414861 BRIP1Q9BX63 1249 aa11.92□□□□□ -0.5
RIF1-202ENST00000414861 FPGT-TNNI3KV9GXZ4 949 aa11.92□□□□□ -0.5
RIF1-202ENST00000414861 ANKRD18AQ8IVF6 992 aa11.92□□□□□ -0.5
RIF1-202ENST00000414861 C10orf71Q711Q0 1435 aa11.91□□□□□ -0.5
RIF1-202ENST00000414861 MX1P20591 662 aa11.91□□□□□ -0.5
RIF1-202ENST00000414861 PDE1AP54750 535 aa11.91□□□□□ -0.5
RIF1-202ENST00000414861 METTL24Q5JXM2 366 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms