RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TUBB4AP04350 444 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 FAM160A1Q05DH4 1040 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 POLR3DP05423 398 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 VIMP08670 466 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 CXorf38Q8TB03 319 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 CCDC94Q9BW85 323 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 COG7P83436 770 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 PLEKHO1Q53GL0 409 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 HDXQ7Z353 690 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 VAV2P52735 878 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 TAOK1Q7L7X3 1001 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 LRRC43Q8N309 656 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 PSPC1Q8WXF1 523 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 TRIM47Q96LD4 638 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 RNF10Q8N5U6 811 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 RBM42Q9BTD8 480 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 IGHMBP2P38935 993 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 HAUS8Q9BT25 410 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 SMIM24O75264 130 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 SPINK5Q9NQ38 1064 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 IDH1O75874 414 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 FMNL3Q8IVF7 1028 aa15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 UBLCP1Q8WVY7 318 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-204ENST00000413716 IRX4P78413 519 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 IQCA1Q86XH1 822 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 INF2Q27J81 1249 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 CCDC25Q86WR0 208 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 CHMP2AO43633 222 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 TWISTNBQ3B726 338 aaPredicted RBP15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 GABPB2Q8TAK5 448 aaPredicted RBP15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 NAPBQ9H115 298 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 PSMD6Q15008 389 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 IMPG2Q9BZV3 1241 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 A6NNZ2 444 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 N4BP3O15049 544 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 TUBB8Q3ZCM7 444 aa15.11■□□□□ 0.01
CCDC88A-204ENST00000413716 KRT86O43790 486 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 PLCB3Q01970 1234 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 TTF1Q15361 905 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 ERMNQ8TAM6 284 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 RAB11FIP3O75154 756 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 PDCD2Q16342 344 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 MMRN2Q9H8L6 949 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 ANKFY1Q9P2R3 1169 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 WDR46O15213 610 aaKnown RBP15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 CCDC65Q8IXS2 484 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 BCAP29Q9UHQ4 241 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 GPRASP1Q5JY77 1395 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 UBASH3AP57075 661 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 HDGFL1Q5TGJ6 251 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 KRBA2Q6ZNG9 492 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 MORC4Q8TE76 937 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 BACH2Q9BYV9 841 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 ZNF131P52739 623 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 LRCH2Q5VUJ6 765 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 SRGAP1Q7Z6B7 1085 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 DIXDC1Q155Q3 683 aa15.1■□□□□ 0.01
CCDC88A-204ENST00000413716 TUBBP07437 444 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 I3L4J1 428 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 PHACTR2O75167 634 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 SLC4A2P04920 1241 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 TERF1P54274 439 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 FERMT3Q86UX7 667 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 TMEM110-MUSTN1A8MSY1 372 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 NLRP5P59047 1200 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 HNRNPMP52272 730 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 SLC4A8Q2Y0W8 1093 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 SMARCC2Q8TAQ2 1214 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 SRGAP3O43295 1099 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 ATP6V0A2Q9Y487 856 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 BIN1O00499 593 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 KRT83P78385 493 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 IFT81Q8WYA0 676 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 ARHGAP25P42331 645 aa15.09■□□□□ 0.01
CCDC88A-204ENST00000413716 POLA1P09884 1462 aaPredicted RBP15.08■□□□□ 0.01
CCDC88A-204ENST00000413716 RAD54L2Q9Y4B4 1467 aa15.08■□□□□ 0.01
CCDC88A-204ENST00000413716 MAP3K21Q5TCX8 1036 aa15.08■□□□□ 0.01
CCDC88A-204ENST00000413716 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.08■□□□□ 0
CCDC88A-204ENST00000413716 NBPF8Q3BBV2 869 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 AFAP1L1Q8TED9 768 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 RNF41Q9H4P4 317 aaPredicted RBP15.08■□□□□ 0
CCDC88A-204ENST00000413716 PPANQ9NQ55 473 aaKnown RBP15.08■□□□□ 0
CCDC88A-204ENST00000413716 MINDY4BA8MYZ0 360 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 TXNDC9O14530 226 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 UVSSAQ2YD98 709 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 CCDC117Q8IWD4 279 aaPredicted RBP15.08■□□□□ 0
CCDC88A-204ENST00000413716 GIGYF1O75420 1035 aaPredicted RBP15.08■□□□□ 0
CCDC88A-204ENST00000413716 LCA5Q86VQ0 697 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 ZNF165P49910 485 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 ITIH3Q06033 890 aa15.08■□□□□ 0
CCDC88A-204ENST00000413716 EIF2AQ9BY44 585 aaKnown RBP15.08■□□□□ 0
CCDC88A-204ENST00000413716 SLF2Q8IX21 1173 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 GJC1P36383 396 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 UAP1Q16222 522 aaPredicted RBP15.07■□□□□ 0
CCDC88A-204ENST00000413716 CEP126Q9P2H0 1117 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 RAB11FIP4Q86YS3 637 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 CSRNP2Q9H175 543 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 Q9H521 79 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 MYL6BP14649 208 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms