RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 SALL2Q9Y467 1007 aaPredicted RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 TNRC6CQ9HCJ0 1690 aaKnown RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 CACNA1SQ13698 1873 aa8.13□□□□□ -1.11
USP54-202ENST00000413442 RTL9Q8NET4 1388 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 NEURL1BA8MQ27 555 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 ATP5J2-PTCD1G3V325 749 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 FZD9O00144 591 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 GCKRQ14397 625 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 GPC2Q8N158 579 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 L3MBTL3Q96JM7 780 aaPredicted RBP8.12□□□□□ -1.11
USP54-202ENST00000413442 CDC5LQ99459 802 aaKnown RBP8.12□□□□□ -1.11
USP54-202ENST00000413442 EYA3Q99504 573 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 PODXL2Q9NZ53 605 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 WWC3Q9ULE0 1092 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 SCN4AP35499 1836 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 LAMB2P55268 1798 aa8.12□□□□□ -1.11
USP54-202ENST00000413442 MYH3P11055 1940 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 ABCC12Q96J65 1359 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 ABCC4O15439 1325 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 KIF3CO14782 793 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 IGKV5-2P06315 115 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 CSF1RP07333 972 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 HCLS1P14317 486 aaPredicted RBP8.11□□□□□ -1.11
USP54-202ENST00000413442 EIF6P56537 245 aaKnown RBP8.11□□□□□ -1.11
USP54-202ENST00000413442 TNIP1Q15025 636 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 DPP8Q6V1X1 898 aaPredicted RBP8.11□□□□□ -1.11
USP54-202ENST00000413442 PNMA8AQ86V59 439 aaPredicted RBP8.11□□□□□ -1.11
USP54-202ENST00000413442 ARHGAP45Q92619 1136 aa8.11□□□□□ -1.11
USP54-202ENST00000413442 DDX60Q8IY21 1712 aaKnown RBP8.11□□□□□ -1.11
USP54-202ENST00000413442 WDR90Q96KV7 1748 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 IPO8O15397 1037 aaKnown RBP8.1□□□□□ -1.11
USP54-202ENST00000413442 ANKRD18AQ8IVF6 992 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 SMC1BQ8NDV3 1235 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 TTLL11Q8NHH1 800 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 SRCIN1Q9C0H9 1055 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 ANKRD2Q9GZV1 360 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 RRAGCQ9HB90 399 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 SPINK5Q9NQ38 1064 aaPredicted RBP8.1□□□□□ -1.11
USP54-202ENST00000413442 BSDC1Q9NW68 430 aaPredicted RBP8.1□□□□□ -1.11
USP54-202ENST00000413442 ZNRF3Q9ULT6 936 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 SNED1Q8TER0 1413 aa8.1□□□□□ -1.11
USP54-202ENST00000413442 ATP2B4P23634 1241 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 RASSF7Q02833 373 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 KIAA2012Q0VF49 1180 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 WASHC4Q2M389 1173 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 BEND3Q5T5X7 828 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 G2E3Q7L622 706 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 NIM1KQ8IY84 436 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 LARGE2Q8N3Y3 721 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 ZC3H12CQ9C0D7 883 aaKnown RBP8.09□□□□□ -1.11
USP54-202ENST00000413442 C9orf78Q9NZ63 289 aaPredicted RBP8.09□□□□□ -1.11
USP54-202ENST00000413442 ZNF219Q9P2Y4 722 aaPredicted RBP8.09□□□□□ -1.11
USP54-202ENST00000413442 LEMD3Q9Y2U8 911 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 TIAM2Q8IVF5 1701 aa8.09□□□□□ -1.11
USP54-202ENST00000413442 UTYO14607 1347 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 GRM8O00222 908 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 HSPA6P17066 643 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 IGHMBP2P38935 993 aaKnown RBP8.08□□□□□ -1.12
USP54-202ENST00000413442 CCT4P50991 539 aaKnown RBP8.08□□□□□ -1.12
USP54-202ENST00000413442 APLP1P51693 650 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 CTSWP56202 376 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 PODNQ7Z5L7 613 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 MIER1Q8N108 512 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 MRPL50Q8N5N7 158 aaKnown RBP8.08□□□□□ -1.12
USP54-202ENST00000413442 DPF2Q92785 391 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 API5Q9BZZ5 524 aaKnown RBP8.08□□□□□ -1.12
USP54-202ENST00000413442 NSFL1CQ9UNZ2 370 aaKnown RBP8.08□□□□□ -1.12
USP54-202ENST00000413442 LRRC37AA6NMS7 1700 aa8.08□□□□□ -1.12
USP54-202ENST00000413442 XDHP47989 1333 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 ANKRD18BA2A2Z9 1011 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 G3V3G9 751 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 PPIP5K2O43314 1243 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 RPS12P25398 132 aaKnown RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 LMOD1P29536 600 aaPredicted RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 PRELPP51888 382 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 CASP7P55210 303 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 IFIT5Q13325 482 aaKnown RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 CWF19L2Q2TBE0 894 aaKnown RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 DCAF8Q5TAQ9 597 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 C3orf67Q6ZVT6 689 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 USP50Q70EL3 339 aaPredicted RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 UBE3BQ7Z3V4 1068 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 ZNF526Q8TF50 670 aaPredicted RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 ZC3H15Q8WU90 426 aaKnown RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 MPHOSPH8Q99549 860 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 NMRK2Q9NPI5 230 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 ZNF277Q9NRM2 450 aaPredicted RBP8.07□□□□□ -1.12
USP54-202ENST00000413442 ANKIB1Q9P2G1 1089 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 HACL1Q9UJ83 578 aa8.07□□□□□ -1.12
USP54-202ENST00000413442 KIF16BQ96L93 1317 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 POTECB2RU33 542 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 C6orf229H3BNL8 230 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 DDNO94850 711 aaPredicted RBP8.06□□□□□ -1.12
USP54-202ENST00000413442 CCDC57Q2TAC2 916 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 RTL5Q5HYW3 569 aaPredicted RBP8.06□□□□□ -1.12
USP54-202ENST00000413442 CIAPIN1Q6FI81 312 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 C15orf52Q6ZUT6 534 aaKnown RBP8.06□□□□□ -1.12
USP54-202ENST00000413442 LDHDQ86WU2 507 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 TBC1D16Q8TBP0 767 aa8.06□□□□□ -1.12
USP54-202ENST00000413442 SSH1Q8WYL5 1049 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms