RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ABCA6Q8N139 1617 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 MCMDC2Q4G0Z9 681 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 BEND3Q5T5X7 828 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 NEURL1BA8MQ27 555 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 TAF5LO75529 589 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 BABAM1Q9NWV8 329 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 CTDP1Q9Y5B0 961 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-204ENST00000412568 PPRC1Q5VV67 1664 aaKnown RBP13.12□□□□□ -0.31
PTPRF-204ENST00000412568 C8orf76Q96K31 380 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 MKNK2Q9HBH9 465 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 KLHL40Q2TBA0 621 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 ANKRD18AQ8IVF6 992 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 UTP14AQ9BVJ6 771 aaKnown RBP13.12□□□□□ -0.31
PTPRF-204ENST00000412568 BRPF1P55201 1214 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-204ENST00000412568 RAB3GAP1Q15042 981 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 NLRP3Q96P20 1036 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 NUP62CLQ9H1M0 184 aa13.12□□□□□ -0.31
PTPRF-204ENST00000412568 GNPATO15228 680 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 SMC2O95347 1197 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 CCDC192P0DO97 292 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 ITGA6P23229 1130 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 EAF2Q96CJ1 260 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-204ENST00000412568 RXRAP19793 462 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 TNNI3KQ59H18 835 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 CREB3L3Q68CJ9 461 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 Q6ZUG5 572 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 UNC5CLQ8IV45 518 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 PDILTQ8N807 584 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 CFAP45Q9UL16 551 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 FPGT-TNNI3KV9GXZ4 949 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 TTC41PQ6P2S7 1318 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 ADGRB3O60242 1522 aa13.11□□□□□ -0.31
PTPRF-204ENST00000412568 A0A0U1RQG5 324 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-204ENST00000412568 F8W031 263 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-204ENST00000412568 HOOK1Q9UJC3 728 aaKnown RBP13.11□□□□□ -0.31
PTPRF-204ENST00000412568 EYA2O00167 538 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 CYP7A1P22680 504 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 KLF18A0A0U1RQI7 1052 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 HOMER1Q86YM7 354 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 ORC3Q9UBD5 711 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-204ENST00000412568 SLC12A7Q9Y666 1083 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 TMEM67Q5HYA8 995 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 NSFL1CQ9UNZ2 370 aaKnown RBP13.1□□□□□ -0.31
PTPRF-204ENST00000412568 CNPY2Q9Y2B0 182 aa13.1□□□□□ -0.31
PTPRF-204ENST00000412568 ZNF622Q969S3 477 aaKnown RBP eCLIP13.1□□□□□ -0.31
PTPRF-204ENST00000412568 MPHOSPH10O00566 681 aaKnown RBP13.09□□□□□ -0.31
PTPRF-204ENST00000412568 SSH3Q8TE77 659 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 GOLGA8AA7E2F4 631 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 BRINP3Q76B58 766 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 DIP2CQ9Y2E4 1556 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 CDKL5O76039 1030 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 FAM173BQ6P4H8 233 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 OLFM4Q6UX06 510 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 TULP4Q9NRJ4 1543 aa13.09□□□□□ -0.31
PTPRF-204ENST00000412568 APOBRQ0VD83 1088 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 FILIP1Q7Z7B0 1213 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 CCDC191Q8NCU4 936 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 KIDINS220Q9ULH0 1771 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 HMGB1P09429 215 aaKnown RBP13.08□□□□□ -0.32
PTPRF-204ENST00000412568 ANAPC15P60006 121 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 DNM1Q05193 864 aaKnown RBP13.08□□□□□ -0.32
PTPRF-204ENST00000412568 ISM2Q6H9L7 571 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 CHAMP1Q96JM3 812 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 PALD1Q9ULE6 856 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 RTCBQ9Y3I0 505 aaKnown RBP13.08□□□□□ -0.32
PTPRF-204ENST00000412568 JMYQ8N9B5 988 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 SMARCC1Q92922 1105 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-204ENST00000412568 SEC62Q99442 399 aaKnown RBP13.08□□□□□ -0.32
PTPRF-204ENST00000412568 SLC4A4Q9Y6R1 1079 aa13.08□□□□□ -0.32
PTPRF-204ENST00000412568 CCDC171Q6TFL3 1326 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 CYP27B1O15528 508 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 TTF1Q15361 905 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-204ENST00000412568 NCOA7Q8NI08 942 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 TCEAL9Q9UHQ7 104 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 SGSM2O43147 1006 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 TSR1Q2NL82 804 aaKnown RBP13.07□□□□□ -0.32
PTPRF-204ENST00000412568 ZSCAN23Q3MJ62 389 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 LRRC24Q50LG9 513 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 MFSD6Q6ZSS7 791 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 ZSCAN30Q86W11 494 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 MAGEB6Q8N7X4 407 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 NAT10Q9H0A0 1025 aaKnown RBP13.07□□□□□ -0.32
PTPRF-204ENST00000412568 SH3TC1Q8TE82 1336 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 BIN1O00499 593 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 TTLL5Q6EMB2 1281 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 GIMAP6Q6P9H5 292 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 IQCA1Q86XH1 822 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 VAT1LQ9HCJ6 419 aa13.07□□□□□ -0.32
PTPRF-204ENST00000412568 TPM2P07951 284 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 XAGE2Q96GT9 111 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 TLR7Q9NYK1 1049 aaKnown RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 TPM3P06753 285 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 MAP3K11Q16584 847 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 ZKSCAN3Q9BRR0 538 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 SLC26A6Q9BXS9 759 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 HMG20BQ9P0W2 317 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 STX8Q9UNK0 236 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 INO80Q9ULG1 1556 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 RNF113AO15541 343 aaKnown RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 UQCRFS1P1P0C7P4 283 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms