RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, human

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP3-205	ENST00000409810	UBE3B	Q7Z3V4	1068 aa		13.81	□□□□□ -0.2
CHMP3-205	ENST00000409810	RTKN2	Q8IZC4	609 aa		13.81	□□□□□ -0.2
CHMP3-205	ENST00000409810	LTBP3	Q9NS15	1303 aa		13.81	□□□□□ -0.2
CHMP3-205	ENST00000409810	TIAM2	Q8IVF5	1701 aa		13.81	□□□□□ -0.2
CHMP3-205	ENST00000409810		H7C1W4	665 aa		13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	BBOX1	O75936	387 aa		13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	LMNB1	P20700	586 aa		13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	CTSW	P56202	376 aa		13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	RASSF7	Q02833	373 aa		13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	C7orf43	Q8WVR3	580 aa		13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	API5	Q9BZZ5	524 aa	Known RBP	13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.8	□□□□□ -0.2
CHMP3-205	ENST00000409810	LRRC37A	A6NMS7	1700 aa		13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	NFKBIE	O00221	500 aa		13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	GRM8	O00222	908 aa		13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	IPO8	O15397	1037 aa	Known RBP	13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	C9orf131	Q5VYM1	1079 aa		13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	JARID2	Q92833	1246 aa	Predicted RBP	13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	PLA2G12B	Q9BX93	195 aa		13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	RNF181	Q9P0P0	153 aa		13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	NOB1	Q9ULX3	412 aa	Known RBP	13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.79	□□□□□ -0.2
CHMP3-205	ENST00000409810	SPEF2	Q9C093	1822 aa		13.78	□□□□□ -0.2
CHMP3-205	ENST00000409810	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
CHMP3-205	ENST00000409810	ARHGAP45	Q92619	1136 aa		13.78	□□□□□ -0.2
CHMP3-205	ENST00000409810	CDC5L	Q99459	802 aa	Known RBP	13.78	□□□□□ -0.2
CHMP3-205	ENST00000409810	ATP6V0A2	Q9Y487	856 aa		13.78	□□□□□ -0.2
CHMP3-205	ENST00000409810	CCT4	P50991	539 aa	Known RBP	13.77	□□□□□ -0.21
CHMP3-205	ENST00000409810	SP8	Q8IXZ3	490 aa		13.77	□□□□□ -0.21
CHMP3-205	ENST00000409810	RTL9	Q8NET4	1388 aa		13.77	□□□□□ -0.21
CHMP3-205	ENST00000409810	PSMD1	Q99460	953 aa		13.77	□□□□□ -0.21
CHMP3-205	ENST00000409810	SNED1	Q8TER0	1413 aa		13.76	□□□□□ -0.21
CHMP3-205	ENST00000409810	CASP7	P55210	303 aa		13.76	□□□□□ -0.21
CHMP3-205	ENST00000409810	SUPT20H	Q8NEM7	779 aa		13.76	□□□□□ -0.21
CHMP3-205	ENST00000409810	CELF1	Q92879	486 aa	Known RBP	13.76	□□□□□ -0.21
CHMP3-205	ENST00000409810	RPS8	P62241	208 aa	Known RBP	13.75	□□□□□ -0.21
CHMP3-205	ENST00000409810	OLFM4	Q6UX06	510 aa		13.75	□□□□□ -0.21
CHMP3-205	ENST00000409810	ANKRD18A	Q8IVF6	992 aa		13.75	□□□□□ -0.21
CHMP3-205	ENST00000409810	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.75	□□□□□ -0.21
CHMP3-205	ENST00000409810	TTLL11	Q8NHH1	800 aa		13.75	□□□□□ -0.21
CHMP3-205	ENST00000409810	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.75	□□□□□ -0.21
CHMP3-205	ENST00000409810	UTY	O14607	1347 aa		13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	BCAR3	O75815	825 aa		13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	IGHMBP2	P38935	993 aa	Known RBP	13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	DPP8	Q6V1X1	898 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	ATF7IP	Q6VMQ6	1270 aa		13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	MPND	Q8N594	471 aa		13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	FRAT1	Q92837	279 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	GREM2	Q9H772	168 aa		13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	SEC31B	Q9NQW1	1179 aa		13.74	□□□□□ -0.21
CHMP3-205	ENST00000409810	CSF1R	P07333	972 aa		13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	IARS	P41252	1262 aa	Known RBP	13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	ZKSCAN2	Q63HK3	967 aa		13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	VPS33B	Q9H267	617 aa		13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	HDAC5	Q9UQL6	1122 aa		13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	CHMP3	Q9Y3E7	222 aa		13.73	□□□□□ -0.21
CHMP3-205	ENST00000409810	KDM2B	Q8NHM5	1336 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	ANKRD18B	A2A2Z9	1011 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	TRIM27	P14373	513 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	ITGA6	P23229	1130 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	PRELP	P51888	382 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	FAM161A	Q3B820	660 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	JDP2	Q8WYK2	163 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	COL4A1	P02462	1669 aa		13.72	□□□□□ -0.21
CHMP3-205	ENST00000409810	LTBP1	Q14766	1721 aa		13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	FOXO4	P98177	505 aa		13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	IFIT5	Q13325	482 aa	Known RBP	13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	CCDC57	Q2TAC2	916 aa		13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	DPY19L2	Q6NUT2	758 aa		13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	FTSJ3	Q8IY81	847 aa	Known RBP	13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	SUCLG2	Q96I99	432 aa		13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	MPHOSPH8	Q99549	860 aa		13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	BSDC1	Q9NW68	430 aa	Predicted RBP	13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.71	□□□□□ -0.21
CHMP3-205	ENST00000409810	PPIP5K2	O43314	1243 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	UBTFL1	P0CB47	393 aa	Predicted RBP	13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	TAF7L	Q5H9L4	462 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	INTS3	Q68E01	1043 aa	Known RBP	13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	LMBR1L	Q6UX01	489 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	LARGE2	Q8N3Y3	721 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	ZNF526	Q8TF50	670 aa	Predicted RBP	13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	EYA3	Q99504	573 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	USP44	Q9H0E7	712 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	ANKIB1	Q9P2G1	1089 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	DUOX1	Q9NRD9	1551 aa		13.7	□□□□□ -0.22
CHMP3-205	ENST00000409810	XDH	P47989	1333 aa		13.69	□□□□□ -0.22
CHMP3-205	ENST00000409810	NIM1K	Q8IY84	436 aa		13.69	□□□□□ -0.22
CHMP3-205	ENST00000409810	YTHDC1	Q96MU7	727 aa	Known RBP	13.69	□□□□□ -0.22
CHMP3-205	ENST00000409810	PODXL2	Q9NZ53	605 aa		13.69	□□□□□ -0.22
CHMP3-205	ENST00000409810	GGA1	Q9UJY5	639 aa		13.69	□□□□□ -0.22
CHMP3-205	ENST00000409810		A0A1B0GUL6	1792 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	GLTPD2	A6NH11	291 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	C6orf229	H3BNL8	230 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	GNAI3	P08754	354 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	MS4A1	P11836	297 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	EIF6	P56537	245 aa	Known RBP	13.68	□□□□□ -0.22

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