RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TMPOP42166 694 aaKnown RBP8.54□□□□□ -1.04
SCN9A-202ENST00000409435 KCNQ4P56696 695 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 SMC1BQ8NDV3 1235 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 MAP3K5Q99683 1374 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 REC8O95072 547 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 ADRA2BP18089 450 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 HIBADHP31937 336 aaKnown RBP8.54□□□□□ -1.04
SCN9A-202ENST00000409435 EPS15P42566 896 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 CCDC129Q6ZRS4 1044 aa8.54□□□□□ -1.04
SCN9A-202ENST00000409435 TTC37Q6PGP7 1564 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 PLEKHG3A1L390 1219 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 ZNF157P51786 506 aaPredicted RBP8.53□□□□□ -1.04
SCN9A-202ENST00000409435 TTC6Q86TZ1 520 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 CAGE1Q8TC20 777 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 RNF41Q9H4P4 317 aaPredicted RBP8.53□□□□□ -1.04
SCN9A-202ENST00000409435 CPS1P31327 1500 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 M0QZ92 97 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 TXLNAP40222 546 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 DOK7Q18PE1 504 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 FAM47CQ5HY64 1035 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 PIBF1Q8WXW3 757 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 HOOK1Q9UJC3 728 aaKnown RBP8.53□□□□□ -1.04
SCN9A-202ENST00000409435 COG6Q9Y2V7 657 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 PALLDQ8WX93 1383 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 MAST1Q9Y2H9 1570 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 FANCIQ9NVI1 1328 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 ZHX3Q9H4I2 956 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 CCDC39Q9UFE4 941 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 RAB3GAP1Q15042 981 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 TBC1D22AQ8WUA7 517 aa8.53□□□□□ -1.04
SCN9A-202ENST00000409435 JARID2Q92833 1246 aaPredicted RBP8.53□□□□□ -1.04
SCN9A-202ENST00000409435 SSFA2P28290 1259 aa8.52□□□□□ -1.04
SCN9A-202ENST00000409435 TNS3Q68CZ2 1445 aa8.52□□□□□ -1.04
SCN9A-202ENST00000409435 ZNF790Q6PG37 636 aa8.52□□□□□ -1.04
SCN9A-202ENST00000409435 GPATCH11Q8N954 259 aa8.52□□□□□ -1.04
SCN9A-202ENST00000409435 RAET1EQ8TD07 263 aa8.52□□□□□ -1.04
SCN9A-202ENST00000409435 TSPYL2Q9H2G4 693 aaPredicted RBP8.52□□□□□ -1.04
SCN9A-202ENST00000409435 ADAMTS8Q9UP79 889 aa8.52□□□□□ -1.04
SCN9A-202ENST00000409435 TSPY2A6NKD2 308 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 PDE8AO60658 829 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 FBLN1P23142 703 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 CT47A1Q5JQC4 288 aaPredicted RBP8.52□□□□□ -1.05
SCN9A-202ENST00000409435 PCMTD1Q96MG8 357 aaPredicted RBP8.52□□□□□ -1.05
SCN9A-202ENST00000409435 JAG2Q9Y219 1238 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 ZBED4O75132 1171 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 TSPY3P0CV98 308 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 TSPY8P0CW00 308 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 CYP7A1P22680 504 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 BBXQ8WY36 941 aaPredicted RBP8.52□□□□□ -1.05
SCN9A-202ENST00000409435 SAMM50Q9Y512 469 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 DPF3Q92784 378 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 COA7Q96BR5 231 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 CLGNO14967 610 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 IMMTQ16891 758 aaKnown RBP8.52□□□□□ -1.05
SCN9A-202ENST00000409435 CCDC178Q5BJE1 867 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 DPP9Q86TI2 863 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 DENND2AQ9ULE3 1009 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 ARHGEF12Q9NZN5 1544 aa8.52□□□□□ -1.05
SCN9A-202ENST00000409435 ATP2B3Q16720 1220 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 MTIF3Q9H2K0 278 aaKnown RBP8.51□□□□□ -1.05
SCN9A-202ENST00000409435 FBXO3Q9UK99 471 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 KCNH4Q9UQ05 1017 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 SAMD9LQ8IVG5 1584 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 RAD17O75943 681 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 DESP17661 470 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 SREBF2Q12772 1141 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 CHPF2Q9P2E5 772 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 STK25O00506 426 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 CTCFLQ8NI51 663 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-202ENST00000409435 CFAP65Q6ZU64 1925 aaKnown RBP8.51□□□□□ -1.05
SCN9A-202ENST00000409435 GTF2IP78347 998 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 KRT26Q7Z3Y9 468 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 WDR66Q8TBY9 1149 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 TCP10L2B9ZVM9 353 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 VEGFAP15692 232 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-202ENST00000409435 C9orf131Q5VYM1 1079 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 RRAGCQ9HB90 399 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 PNMA3Q9UL41 463 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 ATP6V1DQ9Y5K8 247 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 ADCY10Q96PN6 1610 aa8.51□□□□□ -1.05
SCN9A-202ENST00000409435 MAP3K1Q13233 1512 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 METP08581 1390 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 ANXA1P04083 346 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 WDR63Q8IWG1 891 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 TEKT1Q969V4 418 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 KAT14Q9H8E8 782 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 BCCIPQ9P287 314 aaKnown RBP eCLIP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 PAIP2Q9BPZ3 127 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 NOB1Q9ULX3 412 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 A0A0G2JLW4 131 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 PI4KAP2A4QPH2 592 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 RPS6KA4O75676 772 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 BBOX1O75936 387 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 NEBLO76041 1014 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 FOSBP53539 338 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 MTHFSDQ2M296 383 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 LRSAM1Q6UWE0 723 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 TEX11Q8IYF3 940 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 PI4KAP1Q8N8J0 262 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 GOLGA6L10A6NI86 522 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms