RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 ERCC4Q92889 916 aaPredicted RBP11.71□□□□□ -0.54
PTCHD4-202ENST00000398738 ZBTB9Q96C00 473 aa11.71□□□□□ -0.54
PTCHD4-202ENST00000398738 ST7Q9NRC1 585 aa11.71□□□□□ -0.54
PTCHD4-202ENST00000398738 CNTROBQ8N137 903 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 CACTINQ8WUQ7 758 aaKnown RBP11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 CYP46A1Q9Y6A2 500 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 RAD50Q92878 1312 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 USP27XA6NNY8 438 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 WASLO00401 505 aaPredicted RBP11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 ZNF165P49910 485 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 NUTM2GQ5VZR2 741 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 TMEM87AQ8NBN3 555 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 SPATA32Q96LK8 384 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 TTC14Q96N46 770 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 LSG1Q9H089 658 aaKnown RBP11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 USP44Q9H0E7 712 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 SLC52A1Q9NWF4 448 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 HYPKQ9NX55 129 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 OGFRQ9NZT2 677 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 SALL3Q9BXA9 1300 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 USP32Q8NFA0 1604 aa11.7□□□□□ -0.54
PTCHD4-202ENST00000398738 CDK11BP21127 795 aaKnown RBP11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 FGD1P98174 961 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 CCDC144BQ3MJ40 725 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 ZSCAN25Q6NSZ9 544 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 CCDC144CPQ8IYA2 1237 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 KDM4FA0A1W2PPD8 638 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 RAB11FIP3O75154 756 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 TPM3P06753 285 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 DCBLD2Q96PD2 775 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 CTNNA3Q9UI47 895 aa11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 ZNF215Q9UL58 517 aaPredicted RBP11.69□□□□□ -0.54
PTCHD4-202ENST00000398738 NR1I2O75469 434 aa11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 NBPF7P0C2Y1 421 aaPredicted RBP11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 CEP135Q66GS9 1140 aa11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 NAP1L2Q9ULW6 460 aaPredicted RBP11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 USP16Q9Y5T5 823 aa11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 SOS1Q07889 1333 aaPredicted RBP11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 GOLGA6L19H0YKK7 550 aa11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 CCDC30Q5VVM6 783 aa11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 TPCN1Q9ULQ1 816 aa11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 CCDC9Q9Y3X0 531 aaKnown RBP11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 ZC3H13Q5T200 1668 aaKnown RBP11.68□□□□□ -0.54
PTCHD4-202ENST00000398738 CTIFO43310 598 aaKnown RBP11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 ONECUT3O60422 494 aaPredicted RBP11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 GORABQ5T7V8 394 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 STAP2Q9UGK3 403 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 PA2G4Q9UQ80 394 aaKnown RBP11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 SMTNL1A8MU46 457 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 ZNF75DP51815 510 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 LARP1Q6PKG0 1096 aaKnown RBP11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 PI4K2BQ8TCG2 481 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 FEZ1Q99689 392 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 PTPRMP28827 1452 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 ZKSCAN1P17029 563 aaPredicted RBP11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 ELF2Q15723 593 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 FAM227BQ96M60 508 aa11.67□□□□□ -0.54
PTCHD4-202ENST00000398738 RIMS1Q86UR5 1692 aaKnown RBP11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 MAP3K19Q56UN5 1328 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 NUDT7P0C024 238 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 AMPHP49418 695 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 TAF7Q15545 349 aaPredicted RBP11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 HDGFL1Q5TGJ6 251 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 BECN2A8MW95 431 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 ST3GAL1Q11201 340 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 FMNL2Q96PY5 1086 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 TAF6LQ9Y6J9 622 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 KIAA0232Q92628 1395 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 IFT172Q9UG01 1749 aa11.66□□□□□ -0.54
PTCHD4-202ENST00000398738 GTF2E1P29083 439 aaPredicted RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 PTPN14Q15678 1187 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 LRRC2Q9BYS8 371 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 ARHGEF28Q8N1W1 1705 aaKnown RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 C3P01024 1663 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 SKILP12757 684 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 RBM8AQ9Y5S9 174 aaKnown RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 JAK2O60674 1132 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 IFIT2P09913 472 aaKnown RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 HSP90B1P14625 803 aaKnown RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 EN1Q05925 392 aaPredicted RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 KMT5BQ4FZB7 885 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 USHBP1Q8N6Y0 703 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 GTF3C6Q969F1 213 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 KIF1BPQ96EK5 621 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 CCDC8Q9H0W5 538 aaPredicted RBP11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 SIL1Q9H173 461 aa11.65□□□□□ -0.54
PTCHD4-202ENST00000398738 PPLO60437 1756 aa11.65□□□□□ -0.55
PTCHD4-202ENST00000398738 H3BQV1 296 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 IFFO2Q5TF58 517 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 C3orf67Q6ZVT6 689 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 KIF18AQ8NI77 898 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 FTOQ9C0B1 505 aaKnown RBP eCLIP11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 DDX41Q9UJV9 622 aaKnown RBP11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 SLFN14P0C7P3 912 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 PADI6Q6TGC4 694 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 CLASRPQ8N2M8 674 aaKnown RBP11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 RUFY2Q8WXA3 655 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 BOLA2Q9H3K6 86 aa11.64□□□□□ -0.55
PTCHD4-202ENST00000398738 PI4KAP2A4QPH2 592 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms