RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 NLRP3Q96P20 1036 aa16.9■□□□□ 0.3
VAPB-202ENST00000395802 LNPKQ9C0E8 428 aa16.9■□□□□ 0.3
VAPB-202ENST00000395802 COL24A1Q17RW2 1714 aa16.9■□□□□ 0.3
VAPB-202ENST00000395802 ST5P78524 1137 aa16.89■□□□□ 0.29
VAPB-202ENST00000395802 NUTM1Q86Y26 1132 aa16.89■□□□□ 0.29
VAPB-202ENST00000395802 HCLS1P14317 486 aaPredicted RBP16.89■□□□□ 0.29
VAPB-202ENST00000395802 RFX5P48382 616 aaPredicted RBP16.89■□□□□ 0.29
VAPB-202ENST00000395802 PTPN12Q05209 780 aaKnown RBP16.89■□□□□ 0.29
VAPB-202ENST00000395802 ERFEQ4G0M1 354 aa16.89■□□□□ 0.29
VAPB-202ENST00000395802 QSER1Q2KHR3 1735 aa16.89■□□□□ 0.29
VAPB-202ENST00000395802 RTL9Q8NET4 1388 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 MYH3P11055 1940 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 APBB1O00213 710 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 CIAO1O76071 339 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 RGS3P49796 1198 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 SYNE4Q8N205 404 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 CLASRPQ8N2M8 674 aaKnown RBP16.88■□□□□ 0.29
VAPB-202ENST00000395802 RHPN1Q8TCX5 695 aa16.88■□□□□ 0.29
VAPB-202ENST00000395802 ANO8Q9HCE9 1232 aaPredicted RBP16.88■□□□□ 0.29
VAPB-202ENST00000395802 SERPINB2P05120 415 aa16.87■□□□□ 0.29
VAPB-202ENST00000395802 ITGA6P23229 1130 aa16.87■□□□□ 0.29
VAPB-202ENST00000395802 IL15P40933 162 aaPredicted RBP16.87■□□□□ 0.29
VAPB-202ENST00000395802 SF3B3Q15393 1217 aaKnown RBP16.87■□□□□ 0.29
VAPB-202ENST00000395802 FAM161AQ3B820 660 aa16.87■□□□□ 0.29
VAPB-202ENST00000395802 SLC16A10Q8TF71 515 aa16.87■□□□□ 0.29
VAPB-202ENST00000395802 UPF1Q92900 1129 aaKnown RBP eCLIP16.86■□□□□ 0.293e-10■■■■■ 36.6
VAPB-202ENST00000395802 CDC5LQ99459 802 aaKnown RBP16.86■□□□□ 0.29
VAPB-202ENST00000395802 PA2G4Q9UQ80 394 aaKnown RBP16.86■□□□□ 0.29
VAPB-202ENST00000395802 PARP3Q9Y6F1 533 aa16.86■□□□□ 0.29
VAPB-202ENST00000395802 LAMB2P55268 1798 aa16.86■□□□□ 0.29
VAPB-202ENST00000395802 RIC1Q4ADV7 1423 aa16.86■□□□□ 0.29
VAPB-202ENST00000395802 GREM2Q9H772 168 aa16.86■□□□□ 0.29
VAPB-202ENST00000395802 EYA2O00167 538 aa16.85■□□□□ 0.29
VAPB-202ENST00000395802 SIL1Q9H173 461 aa16.85■□□□□ 0.29
VAPB-202ENST00000395802 TUBGCP6Q96RT7 1819 aa16.85■□□□□ 0.29
VAPB-202ENST00000395802 POLRMTO00411 1230 aaKnown RBP16.84■□□□□ 0.29
VAPB-202ENST00000395802 IGHMBP2P38935 993 aaKnown RBP16.84■□□□□ 0.29
VAPB-202ENST00000395802 MPHOSPH8Q99549 860 aa16.84■□□□□ 0.29
VAPB-202ENST00000395802 PRR5LQ6MZQ0 368 aa16.84■□□□□ 0.29
VAPB-202ENST00000395802 LDHAL6AQ6ZMR3 332 aa16.84■□□□□ 0.29
VAPB-202ENST00000395802 KLHDC4Q8TBB5 520 aa16.84■□□□□ 0.29
VAPB-202ENST00000395802 CCDC85AQ96PX6 553 aaPredicted RBP16.84■□□□□ 0.29
VAPB-202ENST00000395802 GPATCH3Q96I76 525 aa16.83■□□□□ 0.28
VAPB-202ENST00000395802 DDX60Q8IY21 1712 aaKnown RBP16.83■□□□□ 0.28
VAPB-202ENST00000395802 MMP10P09238 476 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 DDX46Q7L014 1031 aaKnown RBP16.82■□□□□ 0.28
VAPB-202ENST00000395802 CNNM1Q9NRU3 951 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 AKAP2Q9Y2D5 859 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 ABCC12Q96J65 1359 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 SMARCA5O60264 1052 aaPredicted RBP16.82■□□□□ 0.28
VAPB-202ENST00000395802 IFIT2P09913 472 aaKnown RBP16.82■□□□□ 0.28
VAPB-202ENST00000395802 DDR1Q08345 913 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 IL1RAPL2Q9NP60 686 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 GPR108Q9NPR9 543 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 CEP126Q9P2H0 1117 aa16.82■□□□□ 0.28
VAPB-202ENST00000395802 SASH1O94885 1247 aa16.81■□□□□ 0.28
VAPB-202ENST00000395802 PDE4AP27815 886 aa16.81■□□□□ 0.28
VAPB-202ENST00000395802 ANKRD18AQ8IVF6 992 aa16.81■□□□□ 0.28
VAPB-202ENST00000395802 MROH5Q6ZUA9 1318 aa16.81■□□□□ 0.28
VAPB-202ENST00000395802 MX1P20591 662 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 ZNF594Q96JF6 807 aaPredicted RBP16.8■□□□□ 0.28
VAPB-202ENST00000395802 BRIP1Q9BX63 1249 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 BCL11AQ9H165 835 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 OSBPL3Q9H4L5 887 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 PDE6BP35913 854 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 ATG9AQ7Z3C6 839 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 PLEKHM2Q8IWE5 1019 aa16.8■□□□□ 0.28
VAPB-202ENST00000395802 RPGRQ92834 1020 aaKnown RBP16.8■□□□□ 0.28
VAPB-202ENST00000395802 RBM19Q9Y4C8 960 aaKnown RBP16.8■□□□□ 0.28
VAPB-202ENST00000395802 AOX1Q06278 1338 aa16.79■□□□□ 0.28
VAPB-202ENST00000395802 AACSQ86V21 672 aa16.79■□□□□ 0.28
VAPB-202ENST00000395802 TTC41PQ6P2S7 1318 aa16.79■□□□□ 0.28
VAPB-202ENST00000395802 ERC2O15083 957 aa16.78■□□□□ 0.28
VAPB-202ENST00000395802 TFCP2Q12800 502 aa16.78■□□□□ 0.28
VAPB-202ENST00000395802 CRY2Q49AN0 593 aa16.78■□□□□ 0.28
VAPB-202ENST00000395802 LRRC24Q50LG9 513 aa16.78■□□□□ 0.28
VAPB-202ENST00000395802 METTL24Q5JXM2 366 aa16.78■□□□□ 0.28
VAPB-202ENST00000395802 RBM17Q96I25 401 aaKnown RBP16.78■□□□□ 0.28
VAPB-202ENST00000395802 BSDC1Q9NW68 430 aaPredicted RBP16.78■□□□□ 0.28
VAPB-202ENST00000395802 RIPOR2Q9Y4F9 1068 aa16.78■□□□□ 0.28
VAPB-202ENST00000395802 PDE1AP54750 535 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 RPS8P62241 208 aaKnown RBP16.77■□□□□ 0.28
VAPB-202ENST00000395802 TNNI3KQ59H18 835 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 BMP2KLQ5H9B9 411 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 MSL1Q68DK7 614 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 C16orf71Q8IYS4 520 aaPredicted RBP16.77■□□□□ 0.28
VAPB-202ENST00000395802 SEC31BQ9NQW1 1179 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 STAP2Q9UGK3 403 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 FPGT-TNNI3KV9GXZ4 949 aa16.77■□□□□ 0.28
VAPB-202ENST00000395802 KLRG2A4D1S0 409 aaPredicted RBP16.77■□□□□ 0.27
VAPB-202ENST00000395802 NRXN2Q9P2S2 1712 aa16.76■□□□□ 0.27
VAPB-202ENST00000395802 PUS3Q9BZE2 481 aaKnown RBP16.76■□□□□ 0.27
VAPB-202ENST00000395802 PDE8BO95263 885 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 GRAPQ13588 217 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 C3orf67Q6ZVT6 689 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 TMC4Q7Z404 712 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 CCDC24Q8N4L8 307 aa16.75■□□□□ 0.27
VAPB-202ENST00000395802 GRAPLQ8TC17 118 aaPredicted RBP16.75■□□□□ 0.27
VAPB-202ENST00000395802 EAF2Q96CJ1 260 aaPredicted RBP16.75■□□□□ 0.27
VAPB-202ENST00000395802 BACH2Q9BYV9 841 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms