RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NOB1Q9ULX3 412 aaKnown RBP27.52■■■□□ 2
CLN3-207ENST00000395653 SNED1Q8TER0 1413 aa27.52■■■□□ 2
CLN3-207ENST00000395653 LMNB1P20700 586 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 CCDC152Q4G0S7 254 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 C9orf131Q5VYM1 1079 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 OLFM4Q6UX06 510 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 RTKN2Q8IZC4 609 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 PLA2G12BQ9BX93 195 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 SBF1O95248 1867 aa27.51■■□□□ 1.99
CLN3-207ENST00000395653 CTSWP56202 376 aa27.5■■□□□ 1.99
CLN3-207ENST00000395653 GRIPAP1Q4V328 841 aa27.5■■□□□ 1.99
CLN3-207ENST00000395653 TMC4Q7Z404 712 aa27.5■■□□□ 1.99
CLN3-207ENST00000395653 ATP6V0A2Q9Y487 856 aa27.5■■□□□ 1.99
CLN3-207ENST00000395653 GRM8O00222 908 aa27.5■■□□□ 1.99
CLN3-207ENST00000395653 API5Q9BZZ5 524 aaKnown RBP27.5■■□□□ 1.99
CLN3-207ENST00000395653 RNF181Q9P0P0 153 aa27.5■■□□□ 1.99
CLN3-207ENST00000395653 PRELPP51888 382 aa27.49■■□□□ 1.99
CLN3-207ENST00000395653 ARHGAP45Q92619 1136 aa27.49■■□□□ 1.99
CLN3-207ENST00000395653 TMX4Q9H1E5 349 aaPredicted RBP27.49■■□□□ 1.99
CLN3-207ENST00000395653 MYH3P11055 1940 aa27.48■■□□□ 1.99
CLN3-207ENST00000395653 FKBP4Q02790 459 aaKnown RBP eCLIP27.48■■□□□ 1.99
CLN3-207ENST00000395653 TTLL11Q8NHH1 800 aa27.48■■□□□ 1.99
CLN3-207ENST00000395653 CELF1Q92879 486 aaKnown RBP27.48■■□□□ 1.99
CLN3-207ENST00000395653 C9orf78Q9NZ63 289 aaPredicted RBP27.48■■□□□ 1.99
CLN3-207ENST00000395653 RTL9Q8NET4 1388 aa27.47■■□□□ 1.99
CLN3-207ENST00000395653 SP8Q8IXZ3 490 aa27.47■■□□□ 1.99
CLN3-207ENST00000395653 PSMD1Q99460 953 aa27.46■■□□□ 1.99
CLN3-207ENST00000395653 TAF1P21675 1872 aa27.46■■□□□ 1.99
CLN3-207ENST00000395653 BCAR3O75815 825 aa27.45■■□□□ 1.98
CLN3-207ENST00000395653 SEC31BQ9NQW1 1179 aa27.45■■□□□ 1.98
CLN3-207ENST00000395653 UTYO14607 1347 aa27.45■■□□□ 1.98
CLN3-207ENST00000395653 ZC3H4Q9UPT8 1303 aaKnown RBP27.45■■□□□ 1.98
CLN3-207ENST00000395653 COL4A1P02462 1669 aa27.45■■□□□ 1.98
CLN3-207ENST00000395653 LRRC37AA6NMS7 1700 aa27.45■■□□□ 1.98
CLN3-207ENST00000395653 RPS8P62241 208 aaKnown RBP27.44■■□□□ 1.98
CLN3-207ENST00000395653 ZNF784Q8NCA9 323 aaPredicted RBP27.44■■□□□ 1.98
CLN3-207ENST00000395653 CCDC85AQ96PX6 553 aaPredicted RBP27.44■■□□□ 1.98
CLN3-207ENST00000395653 IPO8O15397 1037 aaKnown RBP27.43■■□□□ 1.98
CLN3-207ENST00000395653 CSF1RP07333 972 aa27.43■■□□□ 1.98
CLN3-207ENST00000395653 CCT4P50991 539 aaKnown RBP27.43■■□□□ 1.98
CLN3-207ENST00000395653 SLC51AQ86UW1 340 aa27.43■■□□□ 1.98
CLN3-207ENST00000395653 GREM2Q9H772 168 aa27.42■■□□□ 1.98
CLN3-207ENST00000395653 CCDC88AQ3V6T2 1871 aa27.42■■□□□ 1.98
CLN3-207ENST00000395653 CDC5LQ99459 802 aaKnown RBP27.41■■□□□ 1.98
CLN3-207ENST00000395653 NBPF7P0C2Y1 421 aaPredicted RBP27.41■■□□□ 1.98
CLN3-207ENST00000395653 FOXO4P98177 505 aa27.41■■□□□ 1.98
CLN3-207ENST00000395653 TIAM2Q8IVF5 1701 aa27.41■■□□□ 1.98
CLN3-207ENST00000395653 DICER1Q9UPY3 1922 aaKnown RBP27.4■■□□□ 1.98
CLN3-207ENST00000395653 ATF7IPQ6VMQ6 1270 aa27.4■■□□□ 1.98
CLN3-207ENST00000395653 ANKRD18AQ8IVF6 992 aa27.4■■□□□ 1.98
CLN3-207ENST00000395653 FRAT1Q92837 279 aaPredicted RBP27.4■■□□□ 1.98
CLN3-207ENST00000395653 ZNF277Q9NRM2 450 aaPredicted RBP27.4■■□□□ 1.98
CLN3-207ENST00000395653 MPNDQ8N594 471 aa27.39■■□□□ 1.97
CLN3-207ENST00000395653 RTFDC1Q9BY42 306 aaPredicted RBP27.39■■□□□ 1.97
CLN3-207ENST00000395653 TRIM27P14373 513 aa27.38■■□□□ 1.97
CLN3-207ENST00000395653 IARSP41252 1262 aaKnown RBP27.38■■□□□ 1.97
CLN3-207ENST00000395653 FAM161AQ3B820 660 aa27.38■■□□□ 1.97
CLN3-207ENST00000395653 DPP8Q6V1X1 898 aaPredicted RBP27.38■■□□□ 1.97
CLN3-207ENST00000395653 USP44Q9H0E7 712 aa27.38■■□□□ 1.97
CLN3-207ENST00000395653 EPHA10Q5JZY3 1008 aa27.37■■□□□ 1.97
CLN3-207ENST00000395653 SUPT20HQ8NEM7 779 aa27.37■■□□□ 1.97
CLN3-207ENST00000395653 SUCLG2Q96I99 432 aa27.37■■□□□ 1.97
CLN3-207ENST00000395653 ITGA6P23229 1130 aa27.36■■□□□ 1.97
CLN3-207ENST00000395653 ZKSCAN2Q63HK3 967 aa27.36■■□□□ 1.97
CLN3-207ENST00000395653 INTS3Q68E01 1043 aaKnown RBP27.35■■□□□ 1.97
CLN3-207ENST00000395653 LMBR1LQ6UX01 489 aa27.35■■□□□ 1.97
CLN3-207ENST00000395653 KAZALD1Q96I82 304 aa27.35■■□□□ 1.97
CLN3-207ENST00000395653 VPS33BQ9H267 617 aa27.35■■□□□ 1.97
CLN3-207ENST00000395653 DUOX1Q9NRD9 1551 aa27.35■■□□□ 1.97
CLN3-207ENST00000395653 BSDC1Q9NW68 430 aaPredicted RBP27.34■■□□□ 1.97
CLN3-207ENST00000395653 ANKRD18BA2A2Z9 1011 aa27.33■■□□□ 1.97
CLN3-207ENST00000395653 NSFL1CQ9UNZ2 370 aaKnown RBP27.33■■□□□ 1.97
CLN3-207ENST00000395653 LTBP1Q14766 1721 aa27.33■■□□□ 1.97
CLN3-207ENST00000395653 IGHMBP2P38935 993 aaKnown RBP27.33■■□□□ 1.96
CLN3-207ENST00000395653 IFIT5Q13325 482 aaKnown RBP27.33■■□□□ 1.96
CLN3-207ENST00000395653 GPBP1L1Q9HC44 474 aaPredicted RBP27.33■■□□□ 1.96
CLN3-207ENST00000395653 PODXL2Q9NZ53 605 aa27.33■■□□□ 1.96
CLN3-207ENST00000395653 CHMP3Q9Y3E7 222 aa27.33■■□□□ 1.96
CLN3-207ENST00000395653 GPSM2P81274 684 aa27.32■■□□□ 1.96
CLN3-207ENST00000395653 RABL6Q3YEC7 729 aaPredicted RBP27.32■■□□□ 1.96
CLN3-207ENST00000395653 ZNF526Q8TF50 670 aaPredicted RBP27.32■■□□□ 1.96
CLN3-207ENST00000395653 JDP2Q8WYK2 163 aa27.31■■□□□ 1.96
CLN3-207ENST00000395653 BICC1Q9H694 974 aaKnown RBP27.31■■□□□ 1.96
CLN3-207ENST00000395653 TNNQ9UQP3 1299 aa27.31■■□□□ 1.96
CLN3-207ENST00000395653 KDM2BQ8NHM5 1336 aa27.3■■□□□ 1.96
CLN3-207ENST00000395653 PPIP5K2O43314 1243 aa27.3■■□□□ 1.96
CLN3-207ENST00000395653 CCDC57Q2TAC2 916 aa27.3■■□□□ 1.96
CLN3-207ENST00000395653 LARGE2Q8N3Y3 721 aa27.3■■□□□ 1.96
CLN3-207ENST00000395653 CLUAP1Q96AJ1 413 aa27.3■■□□□ 1.96
CLN3-207ENST00000395653 YTHDC1Q96MU7 727 aaKnown RBP27.3■■□□□ 1.96
CLN3-207ENST00000395653 COL4A5P29400 1685 aa27.29■■□□□ 1.96
CLN3-207ENST00000395653 GLTPD2A6NH11 291 aa27.29■■□□□ 1.96
CLN3-207ENST00000395653 UBTFL1P0CB47 393 aaPredicted RBP27.29■■□□□ 1.96
CLN3-207ENST00000395653 MPHOSPH8Q99549 860 aa27.29■■□□□ 1.96
CLN3-207ENST00000395653 SPEF2Q9C093 1822 aa27.29■■□□□ 1.96
CLN3-207ENST00000395653 XDHP47989 1333 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 KIAA2012Q0VF49 1180 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 AOC3Q16853 763 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 DPY19L2Q6NUT2 758 aa27.28■■□□□ 1.96
CLN3-207ENST00000395653 ANKRD44Q8N8A2 993 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms