RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 CDC5LQ99459 802 aaKnown RBP14.21□□□□□ -0.14
VPS13A-204ENST00000376634 HMG20BQ9P0W2 317 aa14.21□□□□□ -0.14
VPS13A-204ENST00000376634 UBE2HP62256 183 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 TRMT1LQ7Z2T5 733 aaKnown RBP14.2□□□□□ -0.14
VPS13A-204ENST00000376634 EVI5LQ96CN4 794 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 ARFGAP3Q9NP61 516 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 TRMT112Q9UI30 125 aaKnown RBP14.2□□□□□ -0.14
VPS13A-204ENST00000376634 MCM10Q7L590 875 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 JAKMIP2Q96AA8 810 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 KIF1BO60333 1816 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 TAF7Q15545 349 aaPredicted RBP14.2□□□□□ -0.14
VPS13A-204ENST00000376634 PLCD3Q8N3E9 789 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 PRG4Q92954 1404 aaPredicted RBP14.2□□□□□ -0.14
VPS13A-204ENST00000376634 CCDC77Q9BR77 488 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 CEP83Q9Y592 693 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 N4BP3O15049 544 aa14.2□□□□□ -0.14
VPS13A-204ENST00000376634 TSPY2A6NKD2 308 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 AKR1B10O60218 316 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 PTPRCP08575 1304 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 GMNNO75496 209 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 CCDC102BQ68D86 513 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 USP25Q9UHP3 1055 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 MAP3K9P80192 1104 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 KIF3CO14782 793 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 GNG11P61952 73 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 KIF5AQ12840 1032 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 KRT222Q8N1A0 295 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 AQRO60306 1485 aaKnown RBP eCLIP14.19□□□□□ -0.146e-9■■■■■ 67.2
VPS13A-204ENST00000376634 TPD52P55327 224 aaPredicted RBP14.19□□□□□ -0.14
VPS13A-204ENST00000376634 NCBP1Q09161 790 aaKnown RBP14.19□□□□□ -0.14
VPS13A-204ENST00000376634 GJB2P29033 226 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 MPRIPQ6WCQ1 1025 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 CABP5Q9NP86 173 aa14.19□□□□□ -0.14
VPS13A-204ENST00000376634 GAS8O95995 478 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 ATP2A2P16615 1042 aaKnown RBP14.18□□□□□ -0.14
VPS13A-204ENST00000376634 SYKP43405 635 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 CCDC50Q8IVM0 306 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 KIAA1524Q8TCG1 905 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 C6orf229H3BNL8 230 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 MRVI1Q9Y6F6 885 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 TXNDC16Q9P2K2 825 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 EEF2P13639 858 aaKnown RBP14.18□□□□□ -0.14
VPS13A-204ENST00000376634 ST5P78524 1137 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 SLC26A6Q9BXS9 759 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 CRNKL1Q9BZJ0 848 aaKnown RBP14.18□□□□□ -0.14
VPS13A-204ENST00000376634 IARSP41252 1262 aaKnown RBP14.18□□□□□ -0.14
VPS13A-204ENST00000376634 VAT1LQ9HCJ6 419 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 BMP15O95972 392 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 CYLC1P35663 651 aaPredicted RBP14.18□□□□□ -0.14
VPS13A-204ENST00000376634 NCAPD3P42695 1498 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 MSANTD4Q8NCY6 345 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 SPAG5Q96R06 1193 aa14.18□□□□□ -0.14
VPS13A-204ENST00000376634 ZNF165P49910 485 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 ATP2C2O75185 946 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 CFAP157Q5JU67 520 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 OPA1O60313 960 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 AFAP1Q8N556 730 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 ZSCAN16Q9H4T2 348 aaPredicted RBP14.17□□□□□ -0.14
VPS13A-204ENST00000376634 CCDC121Q6ZUS5 278 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 NESP48681 1621 aa14.17□□□□□ -0.14
VPS13A-204ENST00000376634 UBASH3AP57075 661 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 NCOA7Q8NI08 942 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 TSPY3P0CV98 308 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 TSPY8P0CW00 308 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 SLC4A8Q2Y0W8 1093 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 NBPF1Q3BBV0 1214 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 ZSWIM4Q9H7M6 989 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 CWC25Q9NXE8 425 aaPredicted RBP14.16□□□□□ -0.14
VPS13A-204ENST00000376634 CCDC129Q6ZRS4 1044 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 NAIPQ13075 1403 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 CPSF2Q9P2I0 782 aaKnown RBP14.16□□□□□ -0.14
VPS13A-204ENST00000376634 USP16Q9Y5T5 823 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 VTI1AQ96AJ9 217 aa14.16□□□□□ -0.14
VPS13A-204ENST00000376634 ZC3H6P61129 1189 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 ZGPATQ8N5A5 531 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 LMBR1Q8WVP7 490 aa14.15□□□□□ -0.14
VPS13A-204ENST00000376634 ALDH3A1P30838 453 aa14.15□□□□□ -0.14
VPS13A-204ENST00000376634 MAK16Q9BXY0 300 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 KRT23Q9C075 422 aa14.15□□□□□ -0.14
VPS13A-204ENST00000376634 RPUSD2Q8IZ73 545 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 B4DLN1 442 aa14.15□□□□□ -0.14
VPS13A-204ENST00000376634 MRPL12P52815 198 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 IFIT1BQ5T764 474 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 TNPO1Q92973 898 aaKnown RBP14.15□□□□□ -0.14
VPS13A-204ENST00000376634 PRIMPOLQ96LW4 560 aa14.15□□□□□ -0.14
VPS13A-204ENST00000376634 KCNG4Q8TDN1 519 aa14.15□□□□□ -0.14
VPS13A-204ENST00000376634 DHX29Q7Z478 1369 aaKnown RBP14.14□□□□□ -0.15
VPS13A-204ENST00000376634 CRCPO75575 148 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 ISM2Q6H9L7 571 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 TRIM7Q9C029 511 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 LRPPRCP42704 1394 aaKnown RBP14.14□□□□□ -0.15
VPS13A-204ENST00000376634 LDHCP07864 332 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 NBPF7P0C2Y1 421 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-204ENST00000376634 EPSTI1Q96J88 318 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 TSGA10Q9BZW7 698 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 TMEM110-MUSTN1A8MSY1 372 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 CEP57Q86XR8 500 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 PLS1Q14651 629 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 WTAPQ15007 396 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 HEATR3Q7Z4Q2 680 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms