RNA–Protein interactions for RNA: ENST00000369747.7

UBE3D-203, Transcript of ubiquitin protein ligase E3D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3D, Length 1,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-203ENST00000369747 DDR1Q08345 913 aa21.31■■□□□ 1
UBE3D-203ENST00000369747 MTX1Q13505 466 aa21.31■■□□□ 1
UBE3D-203ENST00000369747 LMBR1LQ6UX01 489 aa21.31■■□□□ 1
UBE3D-203ENST00000369747 NLGN1Q8N2Q7 840 aa21.31■■□□□ 1
UBE3D-203ENST00000369747 CCDC24Q8N4L8 307 aa21.31■■□□□ 1
UBE3D-203ENST00000369747 GOLGB1Q14789 3259 aaKnown RBP21.31■■□□□ 1
UBE3D-203ENST00000369747 GSPT1P15170 499 aaKnown RBP21.31■■□□□ 1
UBE3D-203ENST00000369747 RABL6Q3YEC7 729 aaPredicted RBP21.31■■□□□ 1
UBE3D-203ENST00000369747 SMARCA5O60264 1052 aaPredicted RBP21.3■■□□□ 1
UBE3D-203ENST00000369747 SSH3Q8TE77 659 aa21.3■■□□□ 1
UBE3D-203ENST00000369747 PLA2G12BQ9BX93 195 aa21.3■■□□□ 1
UBE3D-203ENST00000369747 GTF2E1P29083 439 aaPredicted RBP21.29■■□□□ 1
UBE3D-203ENST00000369747 TPTE2Q6XPS3 522 aa21.29■■□□□ 1
UBE3D-203ENST00000369747 OTUD7AQ8TE49 926 aaPredicted RBP21.29■■□□□ 1
UBE3D-203ENST00000369747 CCDC85AQ96PX6 553 aaPredicted RBP21.29■■□□□ 1
UBE3D-203ENST00000369747 NYXQ9GZU5 481 aa21.29■■□□□ 1
UBE3D-203ENST00000369747 SRCAPQ6ZRS2 3230 aa21.29■■□□□ 1
UBE3D-203ENST00000369747 DDX60Q8IY21 1712 aaKnown RBP21.29■■□□□ 1
UBE3D-203ENST00000369747 APBB1O00213 710 aa21.29■■□□□ 1
UBE3D-203ENST00000369747 POLRMTO00411 1230 aaKnown RBP21.29■■□□□ 1
UBE3D-203ENST00000369747 POLA2Q14181 598 aa21.29■■□□□ 1
UBE3D-203ENST00000369747 ABCC12Q96J65 1359 aa21.29■■□□□ 1
UBE3D-203ENST00000369747 BECN1Q14457 450 aa21.28■■□□□ 1
UBE3D-203ENST00000369747 TTC22Q5TAA0 569 aa21.28■■□□□ 1
UBE3D-203ENST00000369747 CHMP3Q9Y3E7 222 aa21.28■■□□□ 1
UBE3D-203ENST00000369747 PDE8AO60658 829 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 SERPINB2P05120 415 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 TBC1D9Q6ZT07 1266 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 MYH3P11055 1940 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 MMP10P09238 476 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 CTSWP56202 376 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 R3HDM1Q15032 1099 aaKnown RBP21.27■■□□□ 1
UBE3D-203ENST00000369747 CNBD1Q8NA66 436 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 TTLL11Q8NHH1 800 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 KLHDC4Q8TBB5 520 aa21.27■■□□□ 1
UBE3D-203ENST00000369747 NPHP1O15259 732 aa21.26■□□□□ 0.99
UBE3D-203ENST00000369747 CSF1RP07333 972 aa21.26■□□□□ 0.99
UBE3D-203ENST00000369747 PRR5LQ6MZQ0 368 aa21.26■□□□□ 0.99
UBE3D-203ENST00000369747 C3orf67Q6ZVT6 689 aa21.26■□□□□ 0.99
UBE3D-203ENST00000369747 PA2G4Q9UQ80 394 aaKnown RBP21.26■□□□□ 0.99
UBE3D-203ENST00000369747 BCL11AQ9H165 835 aa21.25■□□□□ 0.99
UBE3D-203ENST00000369747 EXOC6BQ9Y2D4 811 aa21.25■□□□□ 0.99
UBE3D-203ENST00000369747 SLC10A5Q5PT55 438 aa21.25■□□□□ 0.99
UBE3D-203ENST00000369747 GREM2Q9H772 168 aa21.25■□□□□ 0.99
UBE3D-203ENST00000369747 LAMB2P55268 1798 aa21.24■□□□□ 0.99
UBE3D-203ENST00000369747 CDC45O75419 566 aa21.24■□□□□ 0.99
UBE3D-203ENST00000369747 RFX5P48382 616 aaPredicted RBP21.24■□□□□ 0.99
UBE3D-203ENST00000369747 RBM25P49756 843 aaKnown RBP21.24■□□□□ 0.99
UBE3D-203ENST00000369747 TBC1D2Q9BYX2 928 aa21.23■□□□□ 0.99
UBE3D-203ENST00000369747 PSDA5PKW4 1024 aaPredicted RBP21.22■□□□□ 0.99
UBE3D-203ENST00000369747 SURF6O75683 361 aaKnown RBP21.22■□□□□ 0.99
UBE3D-203ENST00000369747 PTPN12Q05209 780 aaKnown RBP21.22■□□□□ 0.99
UBE3D-203ENST00000369747 CASZ1Q86V15 1759 aa21.22■□□□□ 0.99
UBE3D-203ENST00000369747 HSP90B1P14625 803 aaKnown RBP21.21■□□□□ 0.99
UBE3D-203ENST00000369747 ZNF594Q96JF6 807 aaPredicted RBP21.21■□□□□ 0.99
UBE3D-203ENST00000369747 SIL1Q9H173 461 aa21.21■□□□□ 0.99
UBE3D-203ENST00000369747 PARP3Q9Y6F1 533 aa21.21■□□□□ 0.99
UBE3D-203ENST00000369747 TNRC6CQ9HCJ0 1690 aaKnown RBP21.21■□□□□ 0.99
UBE3D-203ENST00000369747 ZBTB7AO95365 584 aa21.21■□□□□ 0.99
UBE3D-203ENST00000369747 SLC16A10Q8TF71 515 aa21.21■□□□□ 0.99
UBE3D-203ENST00000369747 ITGA6P23229 1130 aa21.2■□□□□ 0.98
UBE3D-203ENST00000369747 CCDC57Q2TAC2 916 aa21.2■□□□□ 0.98
UBE3D-203ENST00000369747 LRRCC1Q9C099 1032 aa21.2■□□□□ 0.98
UBE3D-203ENST00000369747 OSBPL3Q9H4L5 887 aa21.2■□□□□ 0.98
UBE3D-203ENST00000369747 SALL3Q9BXA9 1300 aa21.2■□□□□ 0.98
UBE3D-203ENST00000369747 NRXN2Q9P2S2 1712 aa21.2■□□□□ 0.98
UBE3D-203ENST00000369747 ST5P78524 1137 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 IFIT5Q13325 482 aaKnown RBP21.19■□□□□ 0.98
UBE3D-203ENST00000369747 NLRP3Q96P20 1036 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 COPRSQ9NQ92 184 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 SEC31BQ9NQW1 1179 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 SDSP20132 328 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 PDE1AP54750 535 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 CCDC152Q4G0S7 254 aa21.19■□□□□ 0.98
UBE3D-203ENST00000369747 SF3B3Q15393 1217 aaKnown RBP21.18■□□□□ 0.98
UBE3D-203ENST00000369747 COL4A1P02462 1669 aa21.17■□□□□ 0.98
UBE3D-203ENST00000369747 TAF1P21675 1872 aa21.17■□□□□ 0.98
UBE3D-203ENST00000369747 ANKRD18BA2A2Z9 1011 aa21.16■□□□□ 0.98
UBE3D-203ENST00000369747 ATF5Q9Y2D1 282 aaPredicted RBP21.16■□□□□ 0.98
UBE3D-203ENST00000369747 OS9Q13438 667 aaPredicted RBP21.16■□□□□ 0.98
UBE3D-203ENST00000369747 PUS3Q9BZE2 481 aaKnown RBP21.16■□□□□ 0.98
UBE3D-203ENST00000369747 ANKRD31Q8N7Z5 1873 aa21.15■□□□□ 0.98
UBE3D-203ENST00000369747 G3BP1Q13283 466 aaKnown RBP eCLIP21.15■□□□□ 0.98
UBE3D-203ENST00000369747 LRRC24Q50LG9 513 aa21.15■□□□□ 0.98
UBE3D-203ENST00000369747 KIF2CQ99661 725 aa21.15■□□□□ 0.98
UBE3D-203ENST00000369747 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.15■□□□□ 0.98
UBE3D-203ENST00000369747 RTL9Q8NET4 1388 aa21.15■□□□□ 0.98
UBE3D-203ENST00000369747 RIC1Q4ADV7 1423 aa21.14■□□□□ 0.98
UBE3D-203ENST00000369747 SASH1O94885 1247 aa21.14■□□□□ 0.98
UBE3D-203ENST00000369747 NFKBIBQ15653 356 aa21.14■□□□□ 0.98
UBE3D-203ENST00000369747 TAF7LQ5H9L4 462 aa21.14■□□□□ 0.98
UBE3D-203ENST00000369747 MTFR1LQ9H019 292 aa21.14■□□□□ 0.98
UBE3D-203ENST00000369747 ATG9AQ7Z3C6 839 aa21.14■□□□□ 0.97
UBE3D-203ENST00000369747 BRIP1Q9BX63 1249 aa21.14■□□□□ 0.97
UBE3D-203ENST00000369747 ANTXR1Q9H6X2 564 aa21.14■□□□□ 0.97
UBE3D-203ENST00000369747 IL1RAPL2Q9NP60 686 aa21.14■□□□□ 0.97
UBE3D-203ENST00000369747 HSP90AB4PQ58FF6 505 aa21.13■□□□□ 0.97
UBE3D-203ENST00000369747 RHPN1Q8TCX5 695 aa21.13■□□□□ 0.97
UBE3D-203ENST00000369747 EYA2O00167 538 aa21.12■□□□□ 0.97
UBE3D-203ENST00000369747 EIF5BO60841 1220 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms