RNA–Protein interactions for RNA: ENST00000368291.6

ECHDC1-203, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2 BASIC

Gene ECHDC1, Length 1,354 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-203ENST00000368291 LMNB1P20700 586 aa28.54■■■□□ 2.16
ECHDC1-203ENST00000368291 DDX46Q7L014 1031 aaKnown RBP28.54■■■□□ 2.16
ECHDC1-203ENST00000368291 LRRC37AA6NMS7 1700 aa28.53■■■□□ 2.16
ECHDC1-203ENST00000368291 RARSP54136 660 aaKnown RBP28.53■■■□□ 2.16
ECHDC1-203ENST00000368291 UBE3BQ7Z3V4 1068 aa28.53■■■□□ 2.16
ECHDC1-203ENST00000368291 TAOK3Q9H2K8 898 aa28.53■■■□□ 2.16
ECHDC1-203ENST00000368291 BRPF1P55201 1214 aaPredicted RBP28.52■■■□□ 2.16
ECHDC1-203ENST00000368291 GRAPQ13588 217 aa28.52■■■□□ 2.16
ECHDC1-203ENST00000368291 GRAPLQ8TC17 118 aaPredicted RBP28.52■■■□□ 2.16
ECHDC1-203ENST00000368291 HSP90B1P14625 803 aaKnown RBP28.51■■■□□ 2.16
ECHDC1-203ENST00000368291 SLC4A10Q6U841 1118 aa28.51■■■□□ 2.16
ECHDC1-203ENST00000368291 BBOX1O75936 387 aa28.5■■■□□ 2.15
ECHDC1-203ENST00000368291 CC2D2BQ6DHV5 1058 aa28.5■■■□□ 2.15
ECHDC1-203ENST00000368291 RTKN2Q8IZC4 609 aa28.5■■■□□ 2.15
ECHDC1-203ENST00000368291 CELF1Q92879 486 aaKnown RBP28.5■■■□□ 2.15
ECHDC1-203ENST00000368291 ATP6V0A2Q9Y487 856 aa28.5■■■□□ 2.15
ECHDC1-203ENST00000368291 FKBP4Q02790 459 aaKnown RBP eCLIP28.5■■■□□ 2.15
ECHDC1-203ENST00000368291 CTSWP56202 376 aa28.49■■■□□ 2.15
ECHDC1-203ENST00000368291 PLA2G12BQ9BX93 195 aa28.49■■■□□ 2.15
ECHDC1-203ENST00000368291 SEC31BQ9NQW1 1179 aa28.49■■■□□ 2.15
ECHDC1-203ENST00000368291 SPEF2Q9C093 1822 aa28.48■■■□□ 2.15
ECHDC1-203ENST00000368291 ALDH1L1O75891 902 aa28.48■■■□□ 2.15
ECHDC1-203ENST00000368291 TTLL11Q8NHH1 800 aa28.48■■■□□ 2.15
ECHDC1-203ENST00000368291 SRCIN1Q9C0H9 1055 aa28.48■■■□□ 2.15
ECHDC1-203ENST00000368291 CCDC152Q4G0S7 254 aa28.47■■■□□ 2.15
ECHDC1-203ENST00000368291 SP8Q8IXZ3 490 aa28.47■■■□□ 2.15
ECHDC1-203ENST00000368291 CCDC85AQ96PX6 553 aaPredicted RBP28.47■■■□□ 2.15
ECHDC1-203ENST00000368291 PSMD1Q99460 953 aa28.46■■■□□ 2.15
ECHDC1-203ENST00000368291 NOB1Q9ULX3 412 aaKnown RBP28.46■■■□□ 2.15
ECHDC1-203ENST00000368291 GRM8O00222 908 aa28.45■■■□□ 2.14
ECHDC1-203ENST00000368291 ZNF277Q9NRM2 450 aaPredicted RBP28.45■■■□□ 2.14
ECHDC1-203ENST00000368291 GRIPAP1Q4V328 841 aa28.44■■■□□ 2.14
ECHDC1-203ENST00000368291 LTBP1Q14766 1721 aa28.44■■■□□ 2.14
ECHDC1-203ENST00000368291 RPS8P62241 208 aaKnown RBP28.43■■■□□ 2.14
ECHDC1-203ENST00000368291 TMC4Q7Z404 712 aa28.43■■■□□ 2.14
ECHDC1-203ENST00000368291 ZNF526Q8TF50 670 aaPredicted RBP28.43■■■□□ 2.14
ECHDC1-203ENST00000368291 ZC3H4Q9UPT8 1303 aaKnown RBP28.43■■■□□ 2.14
ECHDC1-203ENST00000368291 GREM2Q9H772 168 aa28.42■■■□□ 2.14
ECHDC1-203ENST00000368291 DUOX1Q9NRD9 1551 aa28.42■■■□□ 2.14
ECHDC1-203ENST00000368291 RTL9Q8NET4 1388 aa28.42■■■□□ 2.14
ECHDC1-203ENST00000368291 COL4A5P29400 1685 aa28.42■■■□□ 2.14
ECHDC1-203ENST00000368291 BCAR3O75815 825 aa28.41■■■□□ 2.14
ECHDC1-203ENST00000368291 CSF1RP07333 972 aa28.41■■■□□ 2.14
ECHDC1-203ENST00000368291 FOXO4P98177 505 aa28.41■■■□□ 2.14
ECHDC1-203ENST00000368291 IARSP41252 1262 aaKnown RBP28.4■■■□□ 2.14
ECHDC1-203ENST00000368291 C9orf78Q9NZ63 289 aaPredicted RBP28.4■■■□□ 2.14
ECHDC1-203ENST00000368291 UTYO14607 1347 aa28.4■■■□□ 2.14
ECHDC1-203ENST00000368291 EPHA10Q5JZY3 1008 aa28.39■■■□□ 2.14
ECHDC1-203ENST00000368291 RTFDC1Q9BY42 306 aaPredicted RBP28.39■■■□□ 2.14
ECHDC1-203ENST00000368291 KIF16BQ96L93 1317 aa28.39■■■□□ 2.14
ECHDC1-203ENST00000368291 NBPF7P0C2Y1 421 aaPredicted RBP28.38■■■□□ 2.13
ECHDC1-203ENST00000368291 MPNDQ8N594 471 aa28.38■■■□□ 2.13
ECHDC1-203ENST00000368291 TMX4Q9H1E5 349 aaPredicted RBP28.38■■■□□ 2.13
ECHDC1-203ENST00000368291 GPBP1L1Q9HC44 474 aaPredicted RBP28.38■■■□□ 2.13
ECHDC1-203ENST00000368291 FAM161AQ3B820 660 aa28.37■■■□□ 2.13
ECHDC1-203ENST00000368291 ARHGAP45Q92619 1136 aa28.37■■■□□ 2.13
ECHDC1-203ENST00000368291 KAZALD1Q96I82 304 aa28.37■■■□□ 2.13
ECHDC1-203ENST00000368291 API5Q9BZZ5 524 aaKnown RBP28.37■■■□□ 2.13
ECHDC1-203ENST00000368291 DPP8Q6V1X1 898 aaPredicted RBP28.36■■■□□ 2.13
ECHDC1-203ENST00000368291 ANKRD18AQ8IVF6 992 aa28.36■■■□□ 2.13
ECHDC1-203ENST00000368291 USP44Q9H0E7 712 aa28.36■■■□□ 2.13
ECHDC1-203ENST00000368291 GLTPD2A6NH11 291 aa28.35■■■□□ 2.13
ECHDC1-203ENST00000368291 SUCLG2Q96I99 432 aa28.35■■■□□ 2.13
ECHDC1-203ENST00000368291 CDC5LQ99459 802 aaKnown RBP28.35■■■□□ 2.13
ECHDC1-203ENST00000368291 ITGA6P23229 1130 aa28.34■■■□□ 2.13
ECHDC1-203ENST00000368291 GPSM2P81274 684 aa28.34■■■□□ 2.13
ECHDC1-203ENST00000368291 TNNQ9UQP3 1299 aa28.34■■■□□ 2.13
ECHDC1-203ENST00000368291 NMRK2Q9NPI5 230 aa28.33■■■□□ 2.13
ECHDC1-203ENST00000368291 NSFL1CQ9UNZ2 370 aaKnown RBP28.33■■■□□ 2.13
ECHDC1-203ENST00000368291 WDR90Q96KV7 1748 aa28.32■■■□□ 2.12
ECHDC1-203ENST00000368291 TRIM27P14373 513 aa28.32■■■□□ 2.12
ECHDC1-203ENST00000368291 CCT4P50991 539 aaKnown RBP28.32■■■□□ 2.12
ECHDC1-203ENST00000368291 LMBR1LQ6UX01 489 aa28.32■■■□□ 2.12
ECHDC1-203ENST00000368291 SUPT20HQ8NEM7 779 aa28.32■■■□□ 2.12
ECHDC1-203ENST00000368291 A0A1B0GUL6 1792 aa28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 KDM2BQ8NHM5 1336 aa28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 FZD9O00144 591 aa28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 AOC3Q16853 763 aa28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 VPS33BQ9H267 617 aa28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 BSDC1Q9NW68 430 aaPredicted RBP28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 POLLQ9UGP5 575 aa28.31■■■□□ 2.12
ECHDC1-203ENST00000368291 KIF3CO14782 793 aa28.3■■■□□ 2.12
ECHDC1-203ENST00000368291 PPIP5K2O43314 1243 aa28.3■■■□□ 2.12
ECHDC1-203ENST00000368291 LARGE2Q8N3Y3 721 aa28.3■■■□□ 2.12
ECHDC1-203ENST00000368291 FRAT1Q92837 279 aaPredicted RBP28.3■■■□□ 2.12
ECHDC1-203ENST00000368291 PODXL2Q9NZ53 605 aa28.3■■■□□ 2.12
ECHDC1-203ENST00000368291 ZNF541Q9H0D2 1346 aa28.29■■■□□ 2.12
ECHDC1-203ENST00000368291 IPO8O15397 1037 aaKnown RBP28.29■■■□□ 2.12
ECHDC1-203ENST00000368291 ATF7IPQ6VMQ6 1270 aa28.29■■■□□ 2.12
ECHDC1-203ENST00000368291 KIAA2012Q0VF49 1180 aa28.28■■■□□ 2.12
ECHDC1-203ENST00000368291 JDP2Q8WYK2 163 aa28.28■■■□□ 2.12
ECHDC1-203ENST00000368291 BICC1Q9H694 974 aaKnown RBP28.28■■■□□ 2.12
ECHDC1-203ENST00000368291 MINPP1Q9UNW1 487 aa28.28■■■□□ 2.12
ECHDC1-203ENST00000368291 ANKRD18BA2A2Z9 1011 aa28.27■■■□□ 2.12
ECHDC1-203ENST00000368291 DDNO94850 711 aaPredicted RBP28.27■■■□□ 2.12
ECHDC1-203ENST00000368291 RABL6Q3YEC7 729 aaPredicted RBP28.27■■■□□ 2.12
ECHDC1-203ENST00000368291 INTS3Q68E01 1043 aaKnown RBP28.27■■■□□ 2.12
ECHDC1-203ENST00000368291 DPY19L2Q6NUT2 758 aa28.27■■■□□ 2.12
ECHDC1-203ENST00000368291 TBC1D16Q8TBP0 767 aa28.27■■■□□ 2.12
ECHDC1-203ENST00000368291 CHMP3Q9Y3E7 222 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms