RNA–Protein interactions for RNA: ENST00000368046.7

CD48-202, Transcript of CD48 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD48, Length 1,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-202ENST00000368046 CCDC191Q8NCU4 936 aa12.62□□□□□ -0.39
CD48-202ENST00000368046 FAM89AQ96GI7 184 aa12.62□□□□□ -0.39
CD48-202ENST00000368046 MAP3K2Q9Y2U5 619 aa12.62□□□□□ -0.39
CD48-202ENST00000368046 NFKBIEO00221 500 aa12.61□□□□□ -0.39
CD48-202ENST00000368046 MNX1P50219 401 aaPredicted RBP12.61□□□□□ -0.39
CD48-202ENST00000368046 NEXNQ0ZGT2 675 aa12.61□□□□□ -0.39
CD48-202ENST00000368046 FLIIQ13045 1269 aa12.61□□□□□ -0.39
CD48-202ENST00000368046 ZBTB38Q8NAP3 1195 aaPredicted RBP12.61□□□□□ -0.39
CD48-202ENST00000368046 RNF181Q9P0P0 153 aa12.61□□□□□ -0.39
CD48-202ENST00000368046 CHD4Q14839 1912 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 ANKRD31Q8N7Z5 1873 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 SPDYE4A6NLX3 237 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 HSP90B1P14625 803 aaKnown RBP12.6□□□□□ -0.39
CD48-202ENST00000368046 RASSF7Q02833 373 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 GRIPAP1Q4V328 841 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 CCDC93Q567U6 631 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 CC2D2BQ6DHV5 1058 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 C3orf67Q6ZVT6 689 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
CD48-202ENST00000368046 RTKN2Q8IZC4 609 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
CD48-202ENST00000368046 CWC25Q9NXE8 425 aaPredicted RBP12.6□□□□□ -0.39
CD48-202ENST00000368046 BRCA1P38398 1863 aaKnown RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 ADCY9O60503 1353 aa12.59□□□□□ -0.39
CD48-202ENST00000368046 IRS4O14654 1257 aaPredicted RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 BBOX1O75936 387 aa12.59□□□□□ -0.39
CD48-202ENST00000368046 PCCAP05165 728 aaPredicted RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 PRELPP51888 382 aa12.59□□□□□ -0.39
CD48-202ENST00000368046 FKBP5Q13451 457 aaPredicted RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 SF3B3Q15393 1217 aaKnown RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 RTL5Q5HYW3 569 aaPredicted RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 CDCA7LQ96GN5 454 aa12.59□□□□□ -0.39
CD48-202ENST00000368046 GPBP1L1Q9HC44 474 aaPredicted RBP12.59□□□□□ -0.39
CD48-202ENST00000368046 LTBP3Q9NS15 1303 aa12.59□□□□□ -0.39
CD48-202ENST00000368046 IGKV5-2P06315 115 aa12.58□□□□□ -0.4
CD48-202ENST00000368046 DDX46Q7L014 1031 aaKnown RBP12.58□□□□□ -0.4
CD48-202ENST00000368046 DNAAF4Q8WXU2 420 aa12.58□□□□□ -0.4
CD48-202ENST00000368046 TMX4Q9H1E5 349 aaPredicted RBP12.58□□□□□ -0.4
CD48-202ENST00000368046 TAOK3Q9H2K8 898 aa12.58□□□□□ -0.4
CD48-202ENST00000368046 ARFGEF1Q9Y6D6 1849 aa12.58□□□□□ -0.4
CD48-202ENST00000368046 FKBP4Q02790 459 aaKnown RBP eCLIP12.57□□□□□ -0.4
CD48-202ENST00000368046 OLFM4Q6UX06 510 aa12.57□□□□□ -0.4
CD48-202ENST00000368046 ZNF526Q8TF50 670 aaPredicted RBP12.57□□□□□ -0.4
CD48-202ENST00000368046 ZC3H4Q9UPT8 1303 aaKnown RBP12.57□□□□□ -0.4
CD48-202ENST00000368046 DLEC1Q9Y238 1755 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 NEURL1BA8MQ27 555 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 H7C1W4 665 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 PPEF1O14829 653 aaPredicted RBP12.56□□□□□ -0.4
CD48-202ENST00000368046 CWF19L2Q2TBE0 894 aaKnown RBP12.56□□□□□ -0.4
CD48-202ENST00000368046 DPY19L2Q6NUT2 758 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 SP8Q8IXZ3 490 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 LINS1Q8NG48 757 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 ATP6V0A2Q9Y487 856 aa12.56□□□□□ -0.4
CD48-202ENST00000368046 PDE8AO60658 829 aa12.55□□□□□ -0.4
CD48-202ENST00000368046 GRAPQ13588 217 aa12.55□□□□□ -0.4
CD48-202ENST00000368046 TMC4Q7Z404 712 aa12.55□□□□□ -0.4
CD48-202ENST00000368046 GRAPLQ8TC17 118 aaPredicted RBP12.55□□□□□ -0.4
CD48-202ENST00000368046 JARID2Q92833 1246 aaPredicted RBP12.55□□□□□ -0.4
CD48-202ENST00000368046 PSMD1Q99460 953 aa12.55□□□□□ -0.4
CD48-202ENST00000368046 ABCC4O15439 1325 aa12.55□□□□□ -0.4
CD48-202ENST00000368046 KDM2BQ8NHM5 1336 aa12.55□□□□□ -0.4
CD48-202ENST00000368046 SLX4Q8IY92 1834 aa12.54□□□□□ -0.4
CD48-202ENST00000368046 GLTPD2A6NH11 291 aa12.54□□□□□ -0.4
CD48-202ENST00000368046 CT47B1P0C2W7 299 aaPredicted RBP12.54□□□□□ -0.4
CD48-202ENST00000368046 ATN1P54259 1190 aaPredicted RBP12.54□□□□□ -0.4
CD48-202ENST00000368046 GCKRQ14397 625 aa12.54□□□□□ -0.4
CD48-202ENST00000368046 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
CD48-202ENST00000368046 CDHR2Q9BYE9 1310 aa12.54□□□□□ -0.4
CD48-202ENST00000368046 COL11A2P13942 1736 aaPredicted RBP12.54□□□□□ -0.4
CD48-202ENST00000368046 F6X3S4 739 aa12.53□□□□□ -0.4
CD48-202ENST00000368046 RPS8P62241 208 aaKnown RBP12.53□□□□□ -0.4
CD48-202ENST00000368046 ALDH1L2Q3SY69 923 aa12.53□□□□□ -0.4
CD48-202ENST00000368046 CCDC152Q4G0S7 254 aa12.53□□□□□ -0.4
CD48-202ENST00000368046 BEND3Q5T5X7 828 aa12.53□□□□□ -0.4
CD48-202ENST00000368046 SSH1Q8WYL5 1049 aa12.53□□□□□ -0.4
CD48-202ENST00000368046 VPS33BQ9H267 617 aa12.53□□□□□ -0.4
CD48-202ENST00000368046 ZNF277Q9NRM2 450 aaPredicted RBP12.53□□□□□ -0.4
CD48-202ENST00000368046 TNRC6CQ9HCJ0 1690 aaKnown RBP12.52□□□□□ -0.4
CD48-202ENST00000368046 IARSP41252 1262 aaKnown RBP12.52□□□□□ -0.41
CD48-202ENST00000368046 C1QTNF8P60827 252 aa12.52□□□□□ -0.41
CD48-202ENST00000368046 HNRNPUQ00839 825 aaKnown RBP eCLIP12.52□□□□□ -0.41
CD48-202ENST00000368046 MPNDQ8N594 471 aa12.52□□□□□ -0.41
CD48-202ENST00000368046 CELF1Q92879 486 aaKnown RBP12.52□□□□□ -0.41
CD48-202ENST00000368046 RRAGCQ9HB90 399 aa12.52□□□□□ -0.41
CD48-202ENST00000368046 ANKRD36CQ5JPF3 1778 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 KIF3CO14782 793 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 UBE3BQ7Z3V4 1068 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 SUPT20HQ8NEM7 779 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 TTLL11Q8NHH1 800 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 JDP2Q8WYK2 163 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 RTFDC1Q9BY42 306 aaPredicted RBP12.51□□□□□ -0.41
CD48-202ENST00000368046 NMRK2Q9NPI5 230 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 SEC31BQ9NQW1 1179 aa12.51□□□□□ -0.41
CD48-202ENST00000368046 ALDH1L1O75891 902 aa12.5□□□□□ -0.41
CD48-202ENST00000368046 VEGFAP15692 232 aaPredicted RBP12.5□□□□□ -0.41
CD48-202ENST00000368046 CASP7P55210 303 aa12.5□□□□□ -0.41
CD48-202ENST00000368046 SLC4A10Q6U841 1118 aa12.5□□□□□ -0.41
CD48-202ENST00000368046 DPP8Q6V1X1 898 aaPredicted RBP12.5□□□□□ -0.41
CD48-202ENST00000368046 PLA2G12BQ9BX93 195 aa12.5□□□□□ -0.41
CD48-202ENST00000368046 SRCIN1Q9C0H9 1055 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms