RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 USP16Q9Y5T5 823 aa14.11□□□□□ -0.15
USF1-201ENST00000368019 POTECB2RU33 542 aa14.1□□□□□ -0.15
USF1-201ENST00000368019 ZNF445P59923 1031 aa14.1□□□□□ -0.15
USF1-201ENST00000368019 TBC1D9Q6ZT07 1266 aa14.1□□□□□ -0.15
USF1-201ENST00000368019 CCDC24Q8N4L8 307 aa14.1□□□□□ -0.15
USF1-201ENST00000368019 ZNF622Q969S3 477 aaKnown RBP eCLIP14.1□□□□□ -0.157e-6■■□□□ 12.8
USF1-201ENST00000368019 TRIM44Q96DX7 344 aaPredicted RBP14.1□□□□□ -0.15
USF1-201ENST00000368019 SETDB2Q96T68 719 aa14.1□□□□□ -0.15
USF1-201ENST00000368019 ZNF330Q9Y3S2 320 aaPredicted RBP14.1□□□□□ -0.15
USF1-201ENST00000368019 PRAMEF22A3QJZ6 481 aa14.09□□□□□ -0.15
USF1-201ENST00000368019 C21orf2O43822 256 aa14.09□□□□□ -0.15
USF1-201ENST00000368019 SPRYD3Q8NCJ5 442 aa14.09□□□□□ -0.15
USF1-201ENST00000368019 CWC22Q9HCG8 908 aaKnown RBP14.09□□□□□ -0.15
USF1-201ENST00000368019 LTBP3Q9NS15 1303 aa14.09□□□□□ -0.15
USF1-201ENST00000368019 SRGNP10124 158 aa14.08□□□□□ -0.16
USF1-201ENST00000368019 ANKRD45Q5TZF3 282 aa14.08□□□□□ -0.16
USF1-201ENST00000368019 STYK1Q6J9G0 422 aa14.08□□□□□ -0.16
USF1-201ENST00000368019 CLEC4GQ6UXB4 293 aa14.08□□□□□ -0.16
USF1-201ENST00000368019 DZIP3Q86Y13 1208 aaKnown RBP14.08□□□□□ -0.16
USF1-201ENST00000368019 CNBD1Q8NA66 436 aa14.08□□□□□ -0.16
USF1-201ENST00000368019 GZF1Q9H116 711 aaPredicted RBP14.08□□□□□ -0.16
USF1-201ENST00000368019 CYP2E1P05181 493 aaPredicted RBP14.07□□□□□ -0.16
USF1-201ENST00000368019 HSP90AA1P07900 732 aaKnown RBP14.07□□□□□ -0.16
USF1-201ENST00000368019 SNRPA1P09661 255 aaKnown RBP14.07□□□□□ -0.16
USF1-201ENST00000368019 PIP4K2AP48426 406 aaPredicted RBP14.07□□□□□ -0.16
USF1-201ENST00000368019 MCM10Q7L590 875 aa14.07□□□□□ -0.16
USF1-201ENST00000368019 CNKSR1Q969H4 720 aa14.07□□□□□ -0.16
USF1-201ENST00000368019 NAP1L5Q96NT1 182 aaPredicted RBP14.07□□□□□ -0.16
USF1-201ENST00000368019 DCTPP1Q9H773 170 aa14.07□□□□□ -0.16
USF1-201ENST00000368019 KLRG2A4D1S0 409 aaPredicted RBP14.06□□□□□ -0.16
USF1-201ENST00000368019 NBPF26B4DH59 902 aa14.06□□□□□ -0.16
USF1-201ENST00000368019 RGL2O15211 777 aa14.06□□□□□ -0.16
USF1-201ENST00000368019 HTATSF1O43719 755 aaKnown RBP14.06□□□□□ -0.16
USF1-201ENST00000368019 INTS3Q68E01 1043 aaKnown RBP14.06□□□□□ -0.16
USF1-201ENST00000368019 NBPF10Q6P3W6 841 aaKnown RBP14.06□□□□□ -0.16
USF1-201ENST00000368019 RPAP2Q8IXW5 612 aaPredicted RBP14.06□□□□□ -0.16
USF1-201ENST00000368019 NBPF15Q8N660 670 aa14.06□□□□□ -0.16
USF1-201ENST00000368019 C7orf43Q8WVR3 580 aa14.06□□□□□ -0.16
USF1-201ENST00000368019 ANP32BQ92688 251 aaKnown RBP14.06□□□□□ -0.16
USF1-201ENST00000368019 LAMB4A4D0S4 1761 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 BAG4O95429 457 aaKnown RBP14.05□□□□□ -0.16
USF1-201ENST00000368019 ST5P78524 1137 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 DCTN1Q14203 1278 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 ERFEQ4G0M1 354 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 TTC22Q5TAA0 569 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 DPY19L2Q6NUT2 758 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 PRPF40BQ6NWY9 871 aaKnown RBP14.05□□□□□ -0.16
USF1-201ENST00000368019 RTF1Q92541 710 aaKnown RBP14.05□□□□□ -0.16
USF1-201ENST00000368019 MASTLQ96GX5 879 aa14.05□□□□□ -0.16
USF1-201ENST00000368019 ZNF219Q9P2Y4 722 aaPredicted RBP14.05□□□□□ -0.16
USF1-201ENST00000368019 KDM3BQ7LBC6 1761 aa14.04□□□□□ -0.16
USF1-201ENST00000368019 NUP98P52948 1817 aa14.04□□□□□ -0.16
USF1-201ENST00000368019 GAS2L3Q86XJ1 694 aa14.04□□□□□ -0.16
USF1-201ENST00000368019 SIRT2Q8IXJ6 389 aa14.04□□□□□ -0.16
USF1-201ENST00000368019 TAOK3Q9H2K8 898 aa14.04□□□□□ -0.16
USF1-201ENST00000368019 TAF7Q15545 349 aaPredicted RBP14.03□□□□□ -0.16
USF1-201ENST00000368019 TWISTNBQ3B726 338 aaPredicted RBP14.03□□□□□ -0.16
USF1-201ENST00000368019 SOGA3Q5TF21 947 aa14.03□□□□□ -0.16
USF1-201ENST00000368019 CASC1Q6TDU7 716 aa14.03□□□□□ -0.16
USF1-201ENST00000368019 ZSCAN30Q86W11 494 aa14.03□□□□□ -0.16
USF1-201ENST00000368019 PLEKHM2Q8IWE5 1019 aa14.03□□□□□ -0.16
USF1-201ENST00000368019 ANKRD44Q8N8A2 993 aa14.03□□□□□ -0.16
USF1-201ENST00000368019 SCN4AP35499 1836 aa14.03□□□□□ -0.16
USF1-201ENST00000368019 PTPRCP08575 1304 aa14.02□□□□□ -0.17
USF1-201ENST00000368019 NASPP49321 788 aaPredicted RBP14.02□□□□□ -0.17
USF1-201ENST00000368019 NBPF5PQ86XG9 351 aaPredicted RBP14.02□□□□□ -0.17
USF1-201ENST00000368019 MBIPQ9NS73 344 aa14.02□□□□□ -0.17
USF1-201ENST00000368019 ZNF652Q9Y2D9 606 aa14.02□□□□□ -0.17
USF1-201ENST00000368019 NPHP1O15259 732 aa14.01□□□□□ -0.17
USF1-201ENST00000368019 EPB41L2O43491 1005 aaKnown RBP14.01□□□□□ -0.17
USF1-201ENST00000368019 DDNO94850 711 aaPredicted RBP14.01□□□□□ -0.17
USF1-201ENST00000368019 CD2BP2O95400 341 aaKnown RBP14.01□□□□□ -0.17
USF1-201ENST00000368019 GSPT1P15170 499 aaKnown RBP14.01□□□□□ -0.17
USF1-201ENST00000368019 NPR1P16066 1061 aa14.01□□□□□ -0.17
USF1-201ENST00000368019 COL13A1Q5TAT6 717 aaPredicted RBP14.01□□□□□ -0.17
USF1-201ENST00000368019 TPTE2Q6XPS3 522 aa14.01□□□□□ -0.17
USF1-201ENST00000368019 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.01□□□□□ -0.17
USF1-201ENST00000368019 USP26Q9BXU7 913 aa14.01□□□□□ -0.17
USF1-201ENST00000368019 ERBB4Q15303 1308 aa14□□□□□ -0.17
USF1-201ENST00000368019 ST18O60284 1047 aa14□□□□□ -0.17
USF1-201ENST00000368019 REC8O95072 547 aa14□□□□□ -0.17
USF1-201ENST00000368019 MCM5P33992 734 aa14□□□□□ -0.17
USF1-201ENST00000368019 MCM2P49736 904 aa14□□□□□ -0.17
USF1-201ENST00000368019 HSP90AA2PQ14568 343 aaPredicted RBP14□□□□□ -0.17
USF1-201ENST00000368019 HLFQ16534 295 aa14□□□□□ -0.17
USF1-201ENST00000368019 IL17RAQ96F46 866 aa14□□□□□ -0.17
USF1-201ENST00000368019 OSBPL3Q9H4L5 887 aa14□□□□□ -0.17
USF1-201ENST00000368019 MIS18AQ9NYP9 233 aa14□□□□□ -0.17
USF1-201ENST00000368019 NIP7Q9Y221 180 aaKnown RBP eCLIP14□□□□□ -0.17
USF1-201ENST00000368019 DDX49Q9Y6V7 483 aaKnown RBP14□□□□□ -0.17
USF1-201ENST00000368019 OFD1O75665 1012 aa13.99□□□□□ -0.17
USF1-201ENST00000368019 CCDC93Q567U6 631 aa13.99□□□□□ -0.17
USF1-201ENST00000368019 CHADLQ6NUI6 762 aa13.99□□□□□ -0.17
USF1-201ENST00000368019 L3MBTL3Q96JM7 780 aaPredicted RBP13.99□□□□□ -0.17
USF1-201ENST00000368019 PDLIM2Q96JY6 352 aa13.99□□□□□ -0.17
USF1-201ENST00000368019 CACNA1FO60840 1977 aa13.99□□□□□ -0.17
USF1-201ENST00000368019 SNED1Q8TER0 1413 aa13.98□□□□□ -0.17
USF1-201ENST00000368019 POTEIP0CG38 1075 aa13.98□□□□□ -0.17
USF1-201ENST00000368019 POTEJP0CG39 1038 aa13.98□□□□□ -0.17
USF1-201ENST00000368019 FKBP4Q02790 459 aaKnown RBP eCLIP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms