RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TUBGCP6Q96RT7 1819 aa22.96■■□□□ 1.27
CLN3-206ENST00000360019 GREM2Q9H772 168 aa22.96■■□□□ 1.27
CLN3-206ENST00000360019 CCDC57Q2TAC2 916 aa22.96■■□□□ 1.27
CLN3-206ENST00000360019 ERFEQ4G0M1 354 aa22.96■■□□□ 1.27
CLN3-206ENST00000360019 ZNF594Q96JF6 807 aaPredicted RBP22.96■■□□□ 1.27
CLN3-206ENST00000360019 NFIXQ14938 502 aa22.95■■□□□ 1.26
CLN3-206ENST00000360019 C8orf34Q49A92 452 aa22.95■■□□□ 1.26
CLN3-206ENST00000360019 ABCC12Q96J65 1359 aa22.94■■□□□ 1.26
CLN3-206ENST00000360019 IFIT5Q13325 482 aaKnown RBP22.94■■□□□ 1.26
CLN3-206ENST00000360019 BACH2Q9BYV9 841 aa22.94■■□□□ 1.26
CLN3-206ENST00000360019 NYXQ9GZU5 481 aa22.94■■□□□ 1.26
CLN3-206ENST00000360019 ITGA6P23229 1130 aa22.93■■□□□ 1.26
CLN3-206ENST00000360019 ATG9AQ7Z3C6 839 aa22.93■■□□□ 1.26
CLN3-206ENST00000360019 NBPF5PQ86XG9 351 aaPredicted RBP22.93■■□□□ 1.26
CLN3-206ENST00000360019 COL23A1Q86Y22 540 aaPredicted RBP22.93■■□□□ 1.26
CLN3-206ENST00000360019 CARMIL3Q8ND23 1372 aa22.93■■□□□ 1.26
CLN3-206ENST00000360019 HSP90B1P14625 803 aaKnown RBP22.92■■□□□ 1.26
CLN3-206ENST00000360019 PDE1AP54750 535 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 SF3B2Q13435 895 aaKnown RBP22.92■■□□□ 1.26
CLN3-206ENST00000360019 BMP2KLQ5H9B9 411 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 DEFB132Q7Z7B7 95 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 CLASRPQ8N2M8 674 aaKnown RBP22.92■■□□□ 1.26
CLN3-206ENST00000360019 OSBPL3Q9H4L5 887 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 ANO8Q9HCE9 1232 aaPredicted RBP22.92■■□□□ 1.26
CLN3-206ENST00000360019 EYA2O00167 538 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 GSPT1P15170 499 aaKnown RBP22.92■■□□□ 1.26
CLN3-206ENST00000360019 MX1P20591 662 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 LRRC24Q50LG9 513 aa22.92■■□□□ 1.26
CLN3-206ENST00000360019 PUS3Q9BZE2 481 aaKnown RBP22.92■■□□□ 1.26
CLN3-206ENST00000360019 PNPLA7Q6ZV29 1317 aa22.91■■□□□ 1.26
CLN3-206ENST00000360019 BAG6P46379 1132 aa22.91■■□□□ 1.26
CLN3-206ENST00000360019 SLC10A5Q5PT55 438 aa22.91■■□□□ 1.26
CLN3-206ENST00000360019 TSHZ3Q63HK5 1081 aa22.91■■□□□ 1.26
CLN3-206ENST00000360019 CIAO1O76071 339 aa22.9■■□□□ 1.26
CLN3-206ENST00000360019 TFCP2Q12800 502 aa22.9■■□□□ 1.26
CLN3-206ENST00000360019 TTC22Q5TAA0 569 aa22.9■■□□□ 1.26
CLN3-206ENST00000360019 TPTE2Q6XPS3 522 aa22.9■■□□□ 1.26
CLN3-206ENST00000360019 C3orf67Q6ZVT6 689 aa22.9■■□□□ 1.26
CLN3-206ENST00000360019 STAP2Q9UGK3 403 aa22.9■■□□□ 1.26
CLN3-206ENST00000360019 ANKRD18BA2A2Z9 1011 aa22.89■■□□□ 1.26
CLN3-206ENST00000360019 GTF2E1P29083 439 aaPredicted RBP22.89■■□□□ 1.26
CLN3-206ENST00000360019 IL15P40933 162 aaPredicted RBP22.89■■□□□ 1.26
CLN3-206ENST00000360019 FLAD1Q8NFF5 587 aa22.89■■□□□ 1.26
CLN3-206ENST00000360019 EAF2Q96CJ1 260 aaPredicted RBP22.89■■□□□ 1.26
CLN3-206ENST00000360019 TM4SF1P30408 202 aa22.89■■□□□ 1.25
CLN3-206ENST00000360019 TAF7LQ5H9L4 462 aa22.89■■□□□ 1.25
CLN3-206ENST00000360019 FBXO3Q9UK99 471 aa22.89■■□□□ 1.25
CLN3-206ENST00000360019 RTL9Q8NET4 1388 aa22.88■■□□□ 1.25
CLN3-206ENST00000360019 CCDC152Q4G0S7 254 aa22.88■■□□□ 1.25
CLN3-206ENST00000360019 AACSQ86V21 672 aa22.88■■□□□ 1.25
CLN3-206ENST00000360019 LRP5O75197 1615 aa22.87■■□□□ 1.25
CLN3-206ENST00000360019 SLC15A2Q16348 729 aa22.87■■□□□ 1.25
CLN3-206ENST00000360019 CCDC24Q8N4L8 307 aa22.87■■□□□ 1.25
CLN3-206ENST00000360019 SF3B3Q15393 1217 aaKnown RBP22.87■■□□□ 1.25
CLN3-206ENST00000360019 SEC31BQ9NQW1 1179 aa22.87■■□□□ 1.25
CLN3-206ENST00000360019 MSH5O43196 834 aa22.86■■□□□ 1.25
CLN3-206ENST00000360019 TNNI3KQ59H18 835 aa22.86■■□□□ 1.25
CLN3-206ENST00000360019 TLR7Q9NYK1 1049 aaKnown RBP22.86■■□□□ 1.25
CLN3-206ENST00000360019 FPGT-TNNI3KV9GXZ4 949 aa22.86■■□□□ 1.25
CLN3-206ENST00000360019 CASZ1Q86V15 1759 aa22.86■■□□□ 1.25
CLN3-206ENST00000360019 IFIT2P09913 472 aaKnown RBP22.85■■□□□ 1.25
CLN3-206ENST00000360019 DDR1Q08345 913 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 LDHAL6AQ6ZMR3 332 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 CCDC8Q9H0W5 538 aaPredicted RBP22.85■■□□□ 1.25
CLN3-206ENST00000360019 AOX1Q06278 1338 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 PRR5LQ6MZQ0 368 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 CNBD1Q8NA66 436 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 PI4K2BQ8TCG2 481 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 STK32BQ9NY57 414 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 RIPOR2Q9Y4F9 1068 aa22.85■■□□□ 1.25
CLN3-206ENST00000360019 RIC1Q4ADV7 1423 aa22.84■■□□□ 1.25
CLN3-206ENST00000360019 COL4A1P02462 1669 aa22.84■■□□□ 1.25
CLN3-206ENST00000360019 POLRMTO00411 1230 aaKnown RBP22.84■■□□□ 1.25
CLN3-206ENST00000360019 TNRC6CQ9HCJ0 1690 aaKnown RBP22.84■■□□□ 1.25
CLN3-206ENST00000360019 SERPINB2P05120 415 aa22.83■■□□□ 1.25
CLN3-206ENST00000360019 NPHP1O15259 732 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 NLGN1Q8N2Q7 840 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 NLRP3Q96P20 1036 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 GPR108Q9NPR9 543 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 TTC41PQ6P2S7 1318 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 SDSP20132 328 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 CCDC125Q86Z20 511 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 CNNM1Q9NRU3 951 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 CEP126Q9P2H0 1117 aa22.82■■□□□ 1.24
CLN3-206ENST00000360019 DBNLQ9UJU6 430 aaKnown RBP22.82■■□□□ 1.24
CLN3-206ENST00000360019 ECHDC1Q9NTX5 307 aa22.81■■□□□ 1.24
CLN3-206ENST00000360019 ZNF609O15014 1411 aa22.81■■□□□ 1.24
CLN3-206ENST00000360019 QSER1Q2KHR3 1735 aa22.81■■□□□ 1.24
CLN3-206ENST00000360019 METTL24Q5JXM2 366 aa22.79■■□□□ 1.24
CLN3-206ENST00000360019 VGLL2Q8N8G2 317 aa22.79■■□□□ 1.24
CLN3-206ENST00000360019 GPATCH3Q96I76 525 aa22.79■■□□□ 1.24
CLN3-206ENST00000360019 CDC5LQ99459 802 aaKnown RBP22.79■■□□□ 1.24
CLN3-206ENST00000360019 DBNDD2Q9BQY9 259 aa22.79■■□□□ 1.24
CLN3-206ENST00000360019 RBM19Q9Y4C8 960 aaKnown RBP22.79■■□□□ 1.24
CLN3-206ENST00000360019 SEC24BO95487 1268 aa22.78■■□□□ 1.24
CLN3-206ENST00000360019 TIMM10P62072 90 aa22.78■■□□□ 1.24
CLN3-206ENST00000360019 A0A1B0GUL7 405 aa22.78■■□□□ 1.24
CLN3-206ENST00000360019 GLRX3O76003 335 aaKnown RBP22.78■■□□□ 1.24
CLN3-206ENST00000360019 IGHMBP2P38935 993 aaKnown RBP22.78■■□□□ 1.24
CLN3-206ENST00000360019 ST5P78524 1137 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms