RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 SASH1O94885 1247 aa22.43■■□□□ 1.18
SMARCD3-202ENST00000356800 OS9Q13438 667 aaPredicted RBP22.43■■□□□ 1.18
SMARCD3-202ENST00000356800 KIF1BPQ96EK5 621 aa22.43■■□□□ 1.18
SMARCD3-202ENST00000356800 IL1RAPL2Q9NP60 686 aa22.43■■□□□ 1.18
SMARCD3-202ENST00000356800 QSER1Q2KHR3 1735 aa22.43■■□□□ 1.18
SMARCD3-202ENST00000356800 G3BP1Q13283 466 aaKnown RBP eCLIP22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 PLEKHM2Q8IWE5 1019 aa22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 GREM2Q9H772 168 aa22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 PNPLA7Q6ZV29 1317 aa22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 ABCC12Q96J65 1359 aa22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 ZNF594Q96JF6 807 aaPredicted RBP22.42■■□□□ 1.18
SMARCD3-202ENST00000356800 CARMIL3Q8ND23 1372 aa22.41■■□□□ 1.18
SMARCD3-202ENST00000356800 NBPF5PQ86XG9 351 aaPredicted RBP22.41■■□□□ 1.18
SMARCD3-202ENST00000356800 ERC1Q8IUD2 1116 aa22.41■■□□□ 1.18
SMARCD3-202ENST00000356800 NYXQ9GZU5 481 aa22.41■■□□□ 1.18
SMARCD3-202ENST00000356800 SALL3Q9BXA9 1300 aa22.41■■□□□ 1.18
SMARCD3-202ENST00000356800 TM4SF1P30408 202 aa22.4■■□□□ 1.18
SMARCD3-202ENST00000356800 CCDC57Q2TAC2 916 aa22.4■■□□□ 1.18
SMARCD3-202ENST00000356800 SLC10A5Q5PT55 438 aa22.39■■□□□ 1.18
SMARCD3-202ENST00000356800 C3orf67Q6ZVT6 689 aa22.39■■□□□ 1.18
SMARCD3-202ENST00000356800 ATG9AQ7Z3C6 839 aa22.39■■□□□ 1.18
SMARCD3-202ENST00000356800 FLAD1Q8NFF5 587 aa22.39■■□□□ 1.18
SMARCD3-202ENST00000356800 ITGA6P23229 1130 aa22.39■■□□□ 1.17
SMARCD3-202ENST00000356800 IFIT5Q13325 482 aaKnown RBP22.39■■□□□ 1.17
SMARCD3-202ENST00000356800 SLC15A2Q16348 729 aa22.39■■□□□ 1.17
SMARCD3-202ENST00000356800 BACH2Q9BYV9 841 aa22.39■■□□□ 1.17
SMARCD3-202ENST00000356800 HSP90B1P14625 803 aaKnown RBP22.38■■□□□ 1.17
SMARCD3-202ENST00000356800 TPTE2Q6XPS3 522 aa22.38■■□□□ 1.17
SMARCD3-202ENST00000356800 TNRC6CQ9HCJ0 1690 aaKnown RBP22.38■■□□□ 1.17
SMARCD3-202ENST00000356800 LRRC24Q50LG9 513 aa22.37■■□□□ 1.17
SMARCD3-202ENST00000356800 CCDC125Q86Z20 511 aa22.37■■□□□ 1.17
SMARCD3-202ENST00000356800 PUS3Q9BZE2 481 aaKnown RBP22.37■■□□□ 1.17
SMARCD3-202ENST00000356800 LRP5O75197 1615 aa22.37■■□□□ 1.17
SMARCD3-202ENST00000356800 EYA2O00167 538 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 MSH5O43196 834 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 GTF2E1P29083 439 aaPredicted RBP22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 DDR1Q08345 913 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 CCDC24Q8N4L8 307 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 STK32BQ9NY57 414 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 RBM19Q9Y4C8 960 aaKnown RBP22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 SPEF2Q9C093 1822 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 TAF1P21675 1872 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 RTL9Q8NET4 1388 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 COL4A1P02462 1669 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 ANKRD18BA2A2Z9 1011 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 CIAO1O76071 339 aa22.36■■□□□ 1.17
SMARCD3-202ENST00000356800 PDE1AP54750 535 aa22.35■■□□□ 1.17
SMARCD3-202ENST00000356800 TFCP2Q12800 502 aa22.35■■□□□ 1.17
SMARCD3-202ENST00000356800 CCDC152Q4G0S7 254 aa22.35■■□□□ 1.17
SMARCD3-202ENST00000356800 SF3B3Q15393 1217 aaKnown RBP22.34■■□□□ 1.17
SMARCD3-202ENST00000356800 CLASRPQ8N2M8 674 aaKnown RBP22.34■■□□□ 1.17
SMARCD3-202ENST00000356800 OSBPL3Q9H4L5 887 aa22.34■■□□□ 1.17
SMARCD3-202ENST00000356800 SEC31BQ9NQW1 1179 aa22.34■■□□□ 1.17
SMARCD3-202ENST00000356800 POLRMTO00411 1230 aaKnown RBP22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 MX1P20591 662 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 IL15P40933 162 aaPredicted RBP22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 C8orf34Q49A92 452 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 TAF7LQ5H9L4 462 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 TSHZ3Q63HK5 1081 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 PRR5LQ6MZQ0 368 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 CNBD1Q8NA66 436 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 EAF2Q96CJ1 260 aaPredicted RBP22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 STAP2Q9UGK3 403 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 FBXO3Q9UK99 471 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 NRXN2Q9P2S2 1712 aa22.33■■□□□ 1.17
SMARCD3-202ENST00000356800 SERPINB2P05120 415 aa22.33■■□□□ 1.16
SMARCD3-202ENST00000356800 GSPT1P15170 499 aaKnown RBP22.33■■□□□ 1.16
SMARCD3-202ENST00000356800 NLGN1Q8N2Q7 840 aa22.33■■□□□ 1.16
SMARCD3-202ENST00000356800 BMP2KLQ5H9B9 411 aa22.32■■□□□ 1.16
SMARCD3-202ENST00000356800 TTC22Q5TAA0 569 aa22.32■■□□□ 1.16
SMARCD3-202ENST00000356800 RIC1Q4ADV7 1423 aa22.31■■□□□ 1.16
SMARCD3-202ENST00000356800 AACSQ86V21 672 aa22.31■■□□□ 1.16
SMARCD3-202ENST00000356800 RIPOR2Q9Y4F9 1068 aa22.31■■□□□ 1.16
SMARCD3-202ENST00000356800 LDHAL6AQ6ZMR3 332 aa22.3■■□□□ 1.16
SMARCD3-202ENST00000356800 NLRP3Q96P20 1036 aa22.3■■□□□ 1.16
SMARCD3-202ENST00000356800 TNNI3KQ59H18 835 aa22.3■■□□□ 1.16
SMARCD3-202ENST00000356800 TLR7Q9NYK1 1049 aaKnown RBP22.3■■□□□ 1.16
SMARCD3-202ENST00000356800 FPGT-TNNI3KV9GXZ4 949 aa22.3■■□□□ 1.16
SMARCD3-202ENST00000356800 ANKRD31Q8N7Z5 1873 aa22.29■■□□□ 1.16
SMARCD3-202ENST00000356800 NPHP1O15259 732 aa22.29■■□□□ 1.16
SMARCD3-202ENST00000356800 IFIT2P09913 472 aaKnown RBP22.29■■□□□ 1.16
SMARCD3-202ENST00000356800 MSL1Q68DK7 614 aa22.29■■□□□ 1.16
SMARCD3-202ENST00000356800 CCDC8Q9H0W5 538 aaPredicted RBP22.29■■□□□ 1.16
SMARCD3-202ENST00000356800 AOX1Q06278 1338 aa22.28■■□□□ 1.16
SMARCD3-202ENST00000356800 PI4K2BQ8TCG2 481 aa22.27■■□□□ 1.16
SMARCD3-202ENST00000356800 PDGFDQ9GZP0 370 aaPredicted RBP22.27■■□□□ 1.16
SMARCD3-202ENST00000356800 GPR108Q9NPR9 543 aa22.27■■□□□ 1.16
SMARCD3-202ENST00000356800 CNNM1Q9NRU3 951 aa22.27■■□□□ 1.16
SMARCD3-202ENST00000356800 ZNF609O15014 1411 aa22.27■■□□□ 1.16
SMARCD3-202ENST00000356800 MMP10P09238 476 aa22.26■■□□□ 1.15
SMARCD3-202ENST00000356800 CEP126Q9P2H0 1117 aa22.26■■□□□ 1.15
SMARCD3-202ENST00000356800 A0A1B0GUL6 1792 aa22.26■■□□□ 1.15
SMARCD3-202ENST00000356800 VGLL2Q8N8G2 317 aa22.26■■□□□ 1.15
SMARCD3-202ENST00000356800 UPF1Q92900 1129 aaKnown RBP eCLIP22.26■■□□□ 1.15
SMARCD3-202ENST00000356800 DBNLQ9UJU6 430 aaKnown RBP22.26■■□□□ 1.15
SMARCD3-202ENST00000356800 TTC41PQ6P2S7 1318 aa22.25■■□□□ 1.15
SMARCD3-202ENST00000356800 ST5P78524 1137 aa22.25■■□□□ 1.15
SMARCD3-202ENST00000356800 CDC5LQ99459 802 aaKnown RBP22.25■■□□□ 1.15
SMARCD3-202ENST00000356800 METTL24Q5JXM2 366 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms