RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MICALL1Q8N3F8 863 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 PI4KAP1Q8N8J0 262 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 USP5P45974 858 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 TMEM132AQ24JP5 1023 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 EHBP1Q8NDI1 1231 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 CEP170Q5SW79 1584 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 FGFR1OPO95684 399 aaKnown RBP22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 MYRIPQ8NFW9 859 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 DCTPP1Q9H773 170 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 TMCO5BA8MYB1 307 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 RIOK3O14730 519 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 USP26Q9BXU7 913 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 PPP1R12BO60237 982 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 HSF2BPO75031 334 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 AK2P54819 239 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 PZPP20742 1482 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 GCOM1H8Y6P7 765 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 MYZAPP0CAP1 466 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 C17orf53Q8N3J3 647 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 STRN4Q9NRL3 753 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 VPS18Q9P253 973 aa22.42■■□□□ 1.18
CCDC88B-202ENST00000356786 AKR1B10O60218 316 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 ZNF445P59923 1031 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 PLEKHM2Q8IWE5 1019 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 NSD2O96028 1365 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 MAGI3Q5TCQ9 1506 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 MRPL50Q8N5N7 158 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 CKAP4Q07065 602 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 KDM2BQ8NHM5 1336 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 ATRIPQ8WXE1 791 aa22.41■■□□□ 1.18
CCDC88B-202ENST00000356786 CEP112Q8N8E3 955 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 SPECC1LQ69YQ0 1117 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 A0A087WZG4 1122 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 RANBP6O60518 1105 aaKnown RBP22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 IQCA1Q86XH1 822 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 USHBP1Q8N6Y0 703 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 SNRKQ9NRH2 765 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 CCDC194A0A1B0GVG4 234 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 EBAG9O00559 213 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 HSPA4P34932 840 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 METAP2P50579 478 aaKnown RBP eCLIP22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 RASSF4Q9H2L5 321 aa22.4■■□□□ 1.18
CCDC88B-202ENST00000356786 NF2P35240 595 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 NLRP5P59047 1200 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 C8orf58Q8NAV2 365 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 ERO1AQ96HE7 468 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 IFNKQ9P0W0 207 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 WASLO00401 505 aaPredicted RBP22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 TRIM21P19474 475 aaKnown RBP22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 CETN2P41208 172 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 MYO1BO43795 1136 aa22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 IRX3P78415 501 aaPredicted RBP22.39■■□□□ 1.17
CCDC88B-202ENST00000356786 KLF18A0A0U1RQI7 1052 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 NOP2P46087 812 aaKnown RBP22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 TOM1L2Q6ZVM7 507 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 IDEP14735 1019 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 MAP3K12Q12852 859 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 TMEM67Q5HYA8 995 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 MARCKSP29966 332 aaPredicted RBP22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 TTC31Q49AM3 519 aaPredicted RBP22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 CCDC91Q7Z6B0 441 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 MAP3K2Q9Y2U5 619 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 CTAGE9A4FU28 777 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 MPRIPQ6WCQ1 1025 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 SLC26A6Q9BXS9 759 aa22.38■■□□□ 1.17
CCDC88B-202ENST00000356786 FBLN1P23142 703 aa22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 HYPKQ9NX55 129 aa22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 UBA7P41226 1012 aa22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 UBE4AQ14139 1066 aa22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 DDX46Q7L014 1031 aaKnown RBP22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 NCOA7Q8NI08 942 aa22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 PRPF4BQ13523 1007 aaKnown RBP22.37■■□□□ 1.17
CCDC88B-202ENST00000356786 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.37■■□□□ 1.178e-7■■□□□ 13.8
CCDC88B-202ENST00000356786 PTCD1O75127 700 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 KARSQ15046 597 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 PLCD3Q8N3E9 789 aa22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 PUF60Q9UHX1 559 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 ABCC10Q5T3U5 1492 aa22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 UBA5Q9GZZ9 404 aa22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 RNF41Q9H4P4 317 aaPredicted RBP22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 AFMP43652 599 aa22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 RNF123Q5XPI4 1314 aa22.36■■□□□ 1.17
CCDC88B-202ENST00000356786 ANXA1P04083 346 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 CYLC1P35663 651 aaPredicted RBP22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 IGHMBP2P38935 993 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 ATP8B2P98198 1209 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 TRIM47Q96LD4 638 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 DRC1Q96MC2 740 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 CTAGE1Q96RT6 745 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 AMOTL2Q9Y2J4 779 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 ZNF76P36508 570 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 IFIT5Q13325 482 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 Q6ZUG5 572 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 RAB34Q9BZG1 259 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 LZTFL1Q9NQ48 299 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 PIP4K2BP78356 416 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 ADGRL2O95490 1459 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 GIGYF2Q6Y7W6 1299 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 PIK3R4Q99570 1358 aa22.35■■□□□ 1.17
CCDC88B-202ENST00000356786 RTL1A6NKG5 1358 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms