RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CNNM3Q8NE01 707 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 C8orf76Q96K31 380 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 STRN4Q9NRL3 753 aa14.33□□□□□ -0.12
COL6A3-203ENST00000353578 HCLS1P14317 486 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-203ENST00000353578 DYNC1I2Q13409 638 aaKnown RBP14.32□□□□□ -0.12
COL6A3-203ENST00000353578 STXBP4Q6ZWJ1 553 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 FBXO3Q9UK99 471 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 TTC21AQ8NDW8 1320 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 HOXA7P31268 230 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-203ENST00000353578 DEUP1Q05D60 604 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 CCHCR1Q8TD31 782 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 GOLGA6BA6NDN3 693 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 AMOTQ4VCS5 1084 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 TEX2Q8IWB9 1127 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 SMARCC2Q8TAQ2 1214 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 SH3GL3Q99963 347 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 TSPYL4Q9UJ04 414 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 SOGA3Q5TF21 947 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 PRC1O43663 620 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 ZSCAN22P10073 491 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-203ENST00000353578 SSFA2P28290 1259 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 TCP11L2Q8N4U5 519 aa14.32□□□□□ -0.12
COL6A3-203ENST00000353578 MICAL1Q8TDZ2 1067 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.31□□□□□ -0.12
COL6A3-203ENST00000353578 CCDC96Q2M329 555 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 CCDC68Q9H2F9 335 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 CCDC26Q8TAB7 109 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 MCUR1Q96AQ8 359 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 CETN3O15182 167 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 ACTN4O43707 911 aaKnown RBP14.31□□□□□ -0.12
COL6A3-203ENST00000353578 IRX1P78414 480 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-203ENST00000353578 KDM4AO75164 1064 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 GTF2E1P29083 439 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-203ENST00000353578 ICE2Q659A1 982 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 PPP1R2P41236 205 aa14.31□□□□□ -0.12
COL6A3-203ENST00000353578 ZEB2O60315 1214 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 IBSPP21815 317 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-203ENST00000353578 RFC1P35251 1148 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-203ENST00000353578 USP37Q86T82 979 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 FSIP1Q8NA03 581 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 ANKRD36BQ8N2N9 1353 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 GMNNO75496 209 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 TMEM266Q2M3C6 531 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 APLFQ8IW19 511 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-203ENST00000353578 A0A087WZG4 1122 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 NOB1Q9ULX3 412 aaKnown RBP14.3□□□□□ -0.12
COL6A3-203ENST00000353578 CSB-PGBD3P0DP91 1061 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 PPP2R1AP30153 589 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 FOSBP53539 338 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 HDAC1Q13547 482 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-203ENST00000353578 CCDC14Q49A88 953 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 GDAP1L1Q96MZ0 367 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 MGEA5O60502 916 aa14.3□□□□□ -0.12
COL6A3-203ENST00000353578 JRKLQ9Y4A0 524 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 EVCP57679 992 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 DRC3Q9H069 523 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 EXOC4Q96A65 974 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 ZC4H2Q9NQZ6 224 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 GTF3C6Q969F1 213 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 ANKRD24Q8TF21 1146 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 ERBINQ96RT1 1412 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 MMS22LQ6ZRQ5 1243 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 ITGB1BP2Q9UKP3 347 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 A0A087WUV0 522 aaPredicted RBP14.29□□□□□ -0.12
COL6A3-203ENST00000353578 FLOT1O75955 427 aa14.29□□□□□ -0.12
COL6A3-203ENST00000353578 UTP14AQ9BVJ6 771 aaKnown RBP14.29□□□□□ -0.12
COL6A3-203ENST00000353578 CAPZA3Q96KX2 299 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 TYRO3Q06418 890 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 GKAP1Q5VSY0 366 aaPredicted RBP14.28□□□□□ -0.12
COL6A3-203ENST00000353578 TBC1D5Q92609 795 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 UBAC1Q9BSL1 405 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 ANO6Q4KMQ2 910 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 GOLGA8KD6RF30 607 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.28□□□□□ -0.12
COL6A3-203ENST00000353578 NSD2O96028 1365 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 AKR1B10O60218 316 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 MAP3K7CLP57077 242 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 MUM1Q2TAK8 710 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 SLC4A8Q2Y0W8 1093 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 TWISTNBQ3B726 338 aaPredicted RBP14.28□□□□□ -0.12
COL6A3-203ENST00000353578 CSRNP2Q9H175 543 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 P3H4Q92791 437 aa14.28□□□□□ -0.12
COL6A3-203ENST00000353578 SLFN5Q08AF3 891 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 KIF1BPQ96EK5 621 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 BICDL2A1A5D9 508 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 CREB3O43889 395 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 CTNNA2P26232 953 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 ZNF131P52739 623 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 HVCN1Q96D96 273 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 CENPKQ9BS16 269 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 RNASELQ05823 741 aaKnown RBP14.27□□□□□ -0.12
COL6A3-203ENST00000353578 TDRD12Q587J7 1177 aaKnown RBP14.27□□□□□ -0.12
COL6A3-203ENST00000353578 CNKSR2Q8WXI2 1034 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 KIAA1107Q9UPP5 1409 aa14.27□□□□□ -0.12
COL6A3-203ENST00000353578 EFCAB8A8MWE9 144 aa14.27□□□□□ -0.13
COL6A3-203ENST00000353578 CCDC152Q4G0S7 254 aa14.27□□□□□ -0.13
COL6A3-203ENST00000353578 CCDC186Q7Z3E2 898 aa14.27□□□□□ -0.13
COL6A3-203ENST00000353578 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.26□□□□□ -0.13
COL6A3-203ENST00000353578 CFAP157Q5JU67 520 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 ODF2LQ9ULJ1 636 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms