RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 NUDCQ9Y266 331 aa9.46□□□□□ -0.9
ZNF540-202ENST00000343599 COL11A1P12107 1806 aaPredicted RBP9.46□□□□□ -0.9
ZNF540-202ENST00000343599 SLC10A3P09131 477 aa9.45□□□□□ -0.9
ZNF540-202ENST00000343599 CDK11BP21127 795 aaKnown RBP9.45□□□□□ -0.9
ZNF540-202ENST00000343599 EIF6P56537 245 aaKnown RBP9.45□□□□□ -0.9
ZNF540-202ENST00000343599 BCS1LQ9Y276 419 aa9.45□□□□□ -0.9
ZNF540-202ENST00000343599 CCER2I3L3R5 266 aa9.45□□□□□ -0.9
ZNF540-202ENST00000343599 RRS1Q15050 365 aaKnown RBP9.45□□□□□ -0.9
ZNF540-202ENST00000343599 TTC5Q8N0Z6 440 aa9.45□□□□□ -0.9
ZNF540-202ENST00000343599 ABHD8Q96I13 439 aa9.45□□□□□ -0.9
ZNF540-202ENST00000343599 EYA3Q99504 573 aa9.45□□□□□ -0.9
ZNF540-202ENST00000343599 MYPNQ86TC9 1320 aa9.44□□□□□ -0.9
ZNF540-202ENST00000343599 ANP32AP39687 249 aaKnown RBP9.44□□□□□ -0.9
ZNF540-202ENST00000343599 MLLT1Q03111 559 aaPredicted RBP9.44□□□□□ -0.9
ZNF540-202ENST00000343599 USPL1Q5W0Q7 1092 aa9.44□□□□□ -0.9
ZNF540-202ENST00000343599 PRPF40BQ6NWY9 871 aaKnown RBP9.44□□□□□ -0.9
ZNF540-202ENST00000343599 DOCK2Q92608 1830 aa9.44□□□□□ -0.9
ZNF540-202ENST00000343599 FOXD4L5Q5VV16 416 aaPredicted RBP9.44□□□□□ -0.9
ZNF540-202ENST00000343599 FOXD4L4Q8WXT5 416 aaPredicted RBP9.44□□□□□ -0.9
ZNF540-202ENST00000343599 ZBED3Q96IU2 234 aaPredicted RBP9.44□□□□□ -0.9
ZNF540-202ENST00000343599 GPRC5DQ9NZD1 345 aa9.44□□□□□ -0.9
ZNF540-202ENST00000343599 ZNRF3Q9ULT6 936 aa9.44□□□□□ -0.9
ZNF540-202ENST00000343599 MORC1Q86VD1 984 aa9.43□□□□□ -0.9
ZNF540-202ENST00000343599 KNSTRNQ9Y448 316 aa9.43□□□□□ -0.9
ZNF540-202ENST00000343599 IL16Q14005 1332 aa9.43□□□□□ -0.9
ZNF540-202ENST00000343599 A0A0G2JLW4 131 aa9.43□□□□□ -0.9
ZNF540-202ENST00000343599 LMOD1P29536 600 aaPredicted RBP9.43□□□□□ -0.9
ZNF540-202ENST00000343599 GIGYF2Q6Y7W6 1299 aaKnown RBP9.43□□□□□ -0.9
ZNF540-202ENST00000343599 SLC45A1Q9Y2W3 748 aa9.43□□□□□ -0.9
ZNF540-202ENST00000343599 FAM205AQ6ZU69 1335 aa9.43□□□□□ -0.9
ZNF540-202ENST00000343599 NEFMP07197 916 aa9.42□□□□□ -0.9
ZNF540-202ENST00000343599 ARMC5Q96C12 935 aa9.42□□□□□ -0.9
ZNF540-202ENST00000343599 FRMPD3Q5JV73 1810 aa9.42□□□□□ -0.9
ZNF540-202ENST00000343599 A0A0G2JMZ2 1700 aa9.42□□□□□ -0.9
ZNF540-202ENST00000343599 FAM155AB1AL88 458 aaPredicted RBP9.42□□□□□ -0.9
ZNF540-202ENST00000343599 NTSR2O95665 410 aa9.42□□□□□ -0.9
ZNF540-202ENST00000343599 CALD1Q05682 793 aaKnown RBP9.42□□□□□ -0.9
ZNF540-202ENST00000343599 TAF7Q15545 349 aaPredicted RBP9.42□□□□□ -0.9
ZNF540-202ENST00000343599 CDC37L1Q7L3B6 337 aa9.42□□□□□ -0.9
ZNF540-202ENST00000343599 FAM43BQ6ZT52 329 aaPredicted RBP9.42□□□□□ -0.9
ZNF540-202ENST00000343599 FOXN1O15353 648 aa9.41□□□□□ -0.9
ZNF540-202ENST00000343599 ZBTB48P10074 688 aaPredicted RBP9.41□□□□□ -0.9
ZNF540-202ENST00000343599 GSE1Q14687 1217 aa9.41□□□□□ -0.9
ZNF540-202ENST00000343599 CCDC27Q2M243 656 aa9.41□□□□□ -0.9
ZNF540-202ENST00000343599 SUGT1Q9Y2Z0 365 aa9.41□□□□□ -0.9
ZNF540-202ENST00000343599 PDS5AQ29RF7 1337 aaKnown RBP9.41□□□□□ -0.9
ZNF540-202ENST00000343599 FMR1Q06787 632 aaKnown RBP eCLIP9.41□□□□□ -0.9
ZNF540-202ENST00000343599 CTU1Q7Z7A3 348 aaKnown RBP9.41□□□□□ -0.9
ZNF540-202ENST00000343599 DNAJC10Q8IXB1 793 aa9.41□□□□□ -0.9
ZNF540-202ENST00000343599 VIL1P09327 827 aaKnown RBP9.4□□□□□ -0.9
ZNF540-202ENST00000343599 VEGFBP49765 207 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 HSP90AA2PQ14568 343 aaPredicted RBP9.4□□□□□ -0.9
ZNF540-202ENST00000343599 FKBP1CQ5VVH2 108 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 GINM1Q9NU53 330 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 MYH13Q9UKX3 1938 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 PHIPQ8WWQ0 1821 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 HDLBPQ00341 1268 aaKnown RBP9.4□□□□□ -0.9
ZNF540-202ENST00000343599 TBC1D9BQ66K14 1250 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 NFATC2IPQ8NCF5 419 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 HOOK2Q96ED9 719 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 PLEKHF1Q96S99 279 aa9.4□□□□□ -0.9
ZNF540-202ENST00000343599 DOCK1Q14185 1865 aa9.4□□□□□ -0.91
ZNF540-202ENST00000343599 SREBF2Q12772 1141 aa9.4□□□□□ -0.91
ZNF540-202ENST00000343599 MTHFSDQ2M296 383 aaKnown RBP9.4□□□□□ -0.91
ZNF540-202ENST00000343599 ERFEQ4G0M1 354 aa9.4□□□□□ -0.91
ZNF540-202ENST00000343599 SYNE4Q8N205 404 aa9.4□□□□□ -0.91
ZNF540-202ENST00000343599 SIN3AQ96ST3 1273 aa9.4□□□□□ -0.91
ZNF540-202ENST00000343599 ZBTB1Q9Y2K1 713 aa9.4□□□□□ -0.91
ZNF540-202ENST00000343599 EP400Q96L91 3159 aa9.39□□□□□ -0.91
ZNF540-202ENST00000343599 TAF7LQ5H9L4 462 aa9.39□□□□□ -0.91
ZNF540-202ENST00000343599 ZNF804BA4D1E1 1349 aa9.39□□□□□ -0.91
ZNF540-202ENST00000343599 GRAPQ13588 217 aa9.39□□□□□ -0.91
ZNF540-202ENST00000343599 RALBP1Q15311 655 aa9.39□□□□□ -0.91
ZNF540-202ENST00000343599 GRAPLQ8TC17 118 aaPredicted RBP9.39□□□□□ -0.91
ZNF540-202ENST00000343599 ISCA1Q9BUE6 129 aa9.39□□□□□ -0.91
ZNF540-202ENST00000343599 PPM1GO15355 546 aaPredicted RBP9.38□□□□□ -0.91
ZNF540-202ENST00000343599 SCNN1DP51172 638 aa9.38□□□□□ -0.91
ZNF540-202ENST00000343599 COL13A1Q5TAT6 717 aaPredicted RBP9.38□□□□□ -0.91
ZNF540-202ENST00000343599 SAPCD2Q86UD0 394 aa9.38□□□□□ -0.91
ZNF540-202ENST00000343599 DZIP3Q86Y13 1208 aaKnown RBP9.38□□□□□ -0.91
ZNF540-202ENST00000343599 CNTROBQ8N137 903 aa9.38□□□□□ -0.91
ZNF540-202ENST00000343599 SYTL4Q96C24 671 aaPredicted RBP9.38□□□□□ -0.91
ZNF540-202ENST00000343599 FBXO46Q6PJ61 603 aaPredicted RBP9.37□□□□□ -0.91
ZNF540-202ENST00000343599 IL17REQ8NFR9 667 aa9.37□□□□□ -0.91
ZNF540-202ENST00000343599 JDP2Q8WYK2 163 aa9.37□□□□□ -0.91
ZNF540-202ENST00000343599 GMLQ99445 158 aa9.37□□□□□ -0.91
ZNF540-202ENST00000343599 PANK3Q9H999 370 aa9.37□□□□□ -0.91
ZNF540-202ENST00000343599 PPEF1O14829 653 aaPredicted RBP9.37□□□□□ -0.91
ZNF540-202ENST00000343599 FAM109BQ6ICB4 259 aaPredicted RBP9.37□□□□□ -0.91
ZNF540-202ENST00000343599 ANKRD23Q86SG2 305 aa9.37□□□□□ -0.91
ZNF540-202ENST00000343599 NIM1KQ8IY84 436 aa9.37□□□□□ -0.91
ZNF540-202ENST00000343599 ZBTB7CA1YPR0 619 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 SULT6B1Q6IMI4 303 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 NBPF15Q8N660 670 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 CAPNS2Q96L46 248 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 MTMR7Q9Y216 660 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 BMP8BP34820 402 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 TEFQ10587 303 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 KIF6Q6ZMV9 814 aa9.36□□□□□ -0.91
ZNF540-202ENST00000343599 APOBEC3FQ8IUX4 373 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms