RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 ECHDC1Q9NTX5 307 aa18.13■□□□□ 0.49
TPM3-208ENST00000341485 TBC1D2BQ9UPU7 963 aa18.13■□□□□ 0.49
TPM3-208ENST00000341485 IFIT2P09913 472 aaKnown RBP18.12■□□□□ 0.49
TPM3-208ENST00000341485 CASP7P55210 303 aa18.12■□□□□ 0.49
TPM3-208ENST00000341485 HLFQ16534 295 aa18.12■□□□□ 0.49
TPM3-208ENST00000341485 CWC27Q6UX04 472 aaKnown RBP18.12■□□□□ 0.49
TPM3-208ENST00000341485 INTS4Q96HW7 963 aaKnown RBP18.12■□□□□ 0.49
TPM3-208ENST00000341485 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.12■□□□□ 0.49
TPM3-208ENST00000341485 ZNF831Q5JPB2 1677 aa18.12■□□□□ 0.49
TPM3-208ENST00000341485 SASH1O94885 1247 aa18.11■□□□□ 0.49
TPM3-208ENST00000341485 EIF5P55010 431 aaKnown RBP18.11■□□□□ 0.49
TPM3-208ENST00000341485 SNX14Q9Y5W7 946 aa18.11■□□□□ 0.49
TPM3-208ENST00000341485 RREB1Q92766 1687 aa18.11■□□□□ 0.49
TPM3-208ENST00000341485 ERVV-1B6SEH8 477 aa18.11■□□□□ 0.49
TPM3-208ENST00000341485 ZNF772Q68DY9 489 aaPredicted RBP18.11■□□□□ 0.49
TPM3-208ENST00000341485 AACSQ86V21 672 aa18.11■□□□□ 0.49
TPM3-208ENST00000341485 COL5A3P25940 1745 aaPredicted RBP18.11■□□□□ 0.49
TPM3-208ENST00000341485 TRIM28Q13263 835 aaKnown RBP18.1■□□□□ 0.49
TPM3-208ENST00000341485 G3BP1Q13283 466 aaKnown RBP eCLIP18.1■□□□□ 0.491e-6■■■□□ 15.4
TPM3-208ENST00000341485 GPATCH3Q96I76 525 aa18.1■□□□□ 0.49
TPM3-208ENST00000341485 CHAMP1Q96JM3 812 aa18.1■□□□□ 0.49
TPM3-208ENST00000341485 BRD1O95696 1058 aa18.1■□□□□ 0.49
TPM3-208ENST00000341485 RABL6Q3YEC7 729 aaPredicted RBP18.1■□□□□ 0.49
TPM3-208ENST00000341485 RASEFQ8IZ41 740 aa18.1■□□□□ 0.49
TPM3-208ENST00000341485 DIAPH3Q9NSV4 1193 aa18.1■□□□□ 0.49
TPM3-208ENST00000341485 CHMP3Q9Y3E7 222 aa18.1■□□□□ 0.49
TPM3-208ENST00000341485 SBF2Q86WG5 1849 aa18.09■□□□□ 0.49
TPM3-208ENST00000341485 ANKRD36CQ5JPF3 1778 aa18.09■□□□□ 0.49
TPM3-208ENST00000341485 GPTP24298 496 aa18.09■□□□□ 0.49
TPM3-208ENST00000341485 FOXD4L5Q5VV16 416 aaPredicted RBP18.09■□□□□ 0.49
TPM3-208ENST00000341485 KIAA1211Q6ZU35 1233 aa18.09■□□□□ 0.49
TPM3-208ENST00000341485 LINC00116Q8NCU8 138 aa18.09■□□□□ 0.49
TPM3-208ENST00000341485 FOXD4L4Q8WXT5 416 aaPredicted RBP18.09■□□□□ 0.49
TPM3-208ENST00000341485 PRPF40AO75400 957 aaKnown RBP18.08■□□□□ 0.49
TPM3-208ENST00000341485 EAF2Q96CJ1 260 aaPredicted RBP18.08■□□□□ 0.49
TPM3-208ENST00000341485 TTC14Q96N46 770 aa18.08■□□□□ 0.49
TPM3-208ENST00000341485 NUP98P52948 1817 aa18.08■□□□□ 0.49
TPM3-208ENST00000341485 KCNQ4P56696 695 aa18.08■□□□□ 0.48
TPM3-208ENST00000341485 LMBR1LQ6UX01 489 aa18.08■□□□□ 0.48
TPM3-208ENST00000341485 KRT27Q7Z3Y8 459 aa18.08■□□□□ 0.48
TPM3-208ENST00000341485 RRAGDQ9NQL2 400 aaPredicted RBP18.08■□□□□ 0.48
TPM3-208ENST00000341485 MYH14Q7Z406 1995 aaKnown RBP18.08■□□□□ 0.48
TPM3-208ENST00000341485 PCCAP05165 728 aaPredicted RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 FOXO4P98177 505 aa18.07■□□□□ 0.48
TPM3-208ENST00000341485 RUFY2Q8WXA3 655 aa18.07■□□□□ 0.48
TPM3-208ENST00000341485 EVI5LQ96CN4 794 aa18.07■□□□□ 0.48
TPM3-208ENST00000341485 SIL1Q9H173 461 aa18.07■□□□□ 0.48
TPM3-208ENST00000341485 CCNL1Q9UK58 526 aaPredicted RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 NCLP19338 710 aaKnown RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 PTH1RQ03431 593 aa18.07■□□□□ 0.48
TPM3-208ENST00000341485 CAVIN1Q6NZI2 390 aaKnown RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 NLRP10Q86W26 655 aa18.07■□□□□ 0.48
TPM3-208ENST00000341485 ZBTB38Q8NAP3 1195 aaPredicted RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 CCDC8Q9H0W5 538 aaPredicted RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 TLR7Q9NYK1 1049 aaKnown RBP18.07■□□□□ 0.48
TPM3-208ENST00000341485 RBM6P78332 1123 aaKnown RBP18.06■□□□□ 0.48
TPM3-208ENST00000341485 KLHDC4Q8TBB5 520 aa18.06■□□□□ 0.48
TPM3-208ENST00000341485 GPT2Q8TD30 523 aa18.06■□□□□ 0.48
TPM3-208ENST00000341485 BCL11BQ9C0K0 894 aaPredicted RBP18.06■□□□□ 0.48
TPM3-208ENST00000341485 CNTNAP4Q9C0A0 1308 aa18.06■□□□□ 0.48
TPM3-208ENST00000341485 ZNF445P59923 1031 aa18.05■□□□□ 0.48
TPM3-208ENST00000341485 FAM196AQ6ZSG2 479 aa18.05■□□□□ 0.48
TPM3-208ENST00000341485 FAM89AQ96GI7 184 aa18.05■□□□□ 0.48
TPM3-208ENST00000341485 BRWD3Q6RI45 1802 aa18.05■□□□□ 0.48
TPM3-208ENST00000341485 COPRSQ9NQ92 184 aa18.05■□□□□ 0.48
TPM3-208ENST00000341485 CAMTA2O94983 1202 aa18.04■□□□□ 0.48
TPM3-208ENST00000341485 RFX5P48382 616 aaPredicted RBP18.04■□□□□ 0.48
TPM3-208ENST00000341485 AK2P54819 239 aa18.04■□□□□ 0.48
TPM3-208ENST00000341485 ZSCAN23Q3MJ62 389 aa18.04■□□□□ 0.48
TPM3-208ENST00000341485 TRMT112Q9UI30 125 aaKnown RBP18.04■□□□□ 0.48
TPM3-208ENST00000341485 PTPN12Q05209 780 aaKnown RBP18.03■□□□□ 0.48
TPM3-208ENST00000341485 RUFY3Q7L099 469 aa18.03■□□□□ 0.48
TPM3-208ENST00000341485 ZNF34Q8IZ26 560 aa18.03■□□□□ 0.48
TPM3-208ENST00000341485 LY75O60449 1722 aa18.03■□□□□ 0.48
TPM3-208ENST00000341485 KCNB2Q92953 911 aa18.03■□□□□ 0.48
TPM3-208ENST00000341485 RBM27Q9P2N5 1060 aaKnown RBP18.03■□□□□ 0.48
TPM3-208ENST00000341485 ZNF652Q9Y2D9 606 aa18.03■□□□□ 0.48
TPM3-208ENST00000341485 CDHR2Q9BYE9 1310 aa18.03■□□□□ 0.48
TPM3-208ENST00000341485 RC3H1Q5TC82 1133 aaKnown RBP18.02■□□□□ 0.48
TPM3-208ENST00000341485 RPAP1Q9BWH6 1393 aaPredicted RBP18.02■□□□□ 0.47
TPM3-208ENST00000341485 CCDC171Q6TFL3 1326 aa18.02■□□□□ 0.47
TPM3-208ENST00000341485 UBN2Q6ZU65 1347 aa18.02■□□□□ 0.47
TPM3-208ENST00000341485 CPA1P15085 419 aa18.02■□□□□ 0.47
TPM3-208ENST00000341485 CASTP20810 708 aaKnown RBP18.02■□□□□ 0.47
TPM3-208ENST00000341485 NMIQ13287 307 aaPredicted RBP18.02■□□□□ 0.47
TPM3-208ENST00000341485 PRPF40BQ6NWY9 871 aaKnown RBP18.02■□□□□ 0.47
TPM3-208ENST00000341485 FAM227BQ96M60 508 aa18.02■□□□□ 0.47
TPM3-208ENST00000341485 PLA2G12BQ9BX93 195 aa18.02■□□□□ 0.47
TPM3-208ENST00000341485 NSFL1CQ9UNZ2 370 aaKnown RBP18.02■□□□□ 0.47
TPM3-208ENST00000341485 LARP6Q9BRS8 491 aaKnown RBP18.01■□□□□ 0.47
TPM3-208ENST00000341485 BOLA2Q9H3K6 86 aa18.01■□□□□ 0.47
TPM3-208ENST00000341485 LIMCH1Q9UPQ0 1083 aa18.01■□□□□ 0.47
TPM3-208ENST00000341485 HIP1O00291 1037 aa18■□□□□ 0.47
TPM3-208ENST00000341485 GNPATO15228 680 aa18■□□□□ 0.47
TPM3-208ENST00000341485 ADCK5Q3MIX3 580 aa18■□□□□ 0.47
TPM3-208ENST00000341485 BCORQ6W2J9 1755 aa18■□□□□ 0.47
TPM3-208ENST00000341485 IRS4O14654 1257 aaPredicted RBP18■□□□□ 0.47
TPM3-208ENST00000341485 RPS6KA4O75676 772 aa18■□□□□ 0.47
TPM3-208ENST00000341485 NECTIN1Q15223 517 aa18■□□□□ 0.47
TPM3-208ENST00000341485 CCDC57Q2TAC2 916 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms