RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 BICC1Q9H694 974 aaKnown RBP11.99□□□□□ -0.49
USP54-201ENST00000339859 CCDC73Q6ZRK6 1079 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 FAM89AQ96GI7 184 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 CCDC196A0A1B0GTZ2 297 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 TNIP1Q15025 636 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 R3HCC1Q9Y3T6 440 aaKnown RBP11.99□□□□□ -0.49
USP54-201ENST00000339859 FOXD4L6Q3SYB3 417 aaPredicted RBP11.99□□□□□ -0.49
USP54-201ENST00000339859 FOXD4L3Q6VB84 417 aaPredicted RBP11.99□□□□□ -0.49
USP54-201ENST00000339859 TRIM35Q9UPQ4 493 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 LDHBP07195 334 aaKnown RBP11.98□□□□□ -0.49
USP54-201ENST00000339859 VEZTQ9HBM0 779 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 SNRKQ9NRH2 765 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 MYO3AQ8NEV4 1616 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 HCLS1P14317 486 aaPredicted RBP11.98□□□□□ -0.49
USP54-201ENST00000339859 CNKSR1Q969H4 720 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 BCORL1Q5H9F3 1711 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 ANKRD44Q8N8A2 993 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 TCIRG1Q13488 830 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 CTCFLQ8NI51 663 aaPredicted RBP11.98□□□□□ -0.49
USP54-201ENST00000339859 USP31Q70CQ4 1352 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 PUM3Q15397 648 aaKnown RBP11.98□□□□□ -0.49
USP54-201ENST00000339859 RBM26Q5T8P6 1007 aaKnown RBP11.98□□□□□ -0.49
USP54-201ENST00000339859 HOOK2Q96ED9 719 aa11.98□□□□□ -0.49
USP54-201ENST00000339859 IL6STP40189 918 aaPredicted RBP11.97□□□□□ -0.49
USP54-201ENST00000339859 IL17REQ8NFR9 667 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 BCS1LQ9Y276 419 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 KIAA1210Q9ULL0 1709 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 MAGEB6P1A0A0J9YX57 407 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 GNAT2P19087 354 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 TSR1Q2NL82 804 aaKnown RBP11.97□□□□□ -0.49
USP54-201ENST00000339859 SLC27A3Q5K4L6 730 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 SETD1BQ9UPS6 1966 aaKnown RBP11.97□□□□□ -0.49
USP54-201ENST00000339859 GIGYF1O75420 1035 aaPredicted RBP11.97□□□□□ -0.49
USP54-201ENST00000339859 STK3Q13188 491 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 CHMP5Q9NZZ3 219 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 MROH5Q6ZUA9 1318 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 PALLDQ8WX93 1383 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 CATIPQ7Z7H3 387 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 MPNDQ8N594 471 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 USP19O94966 1318 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 MAP3K15Q6ZN16 1313 aa11.97□□□□□ -0.49
USP54-201ENST00000339859 TPM1P09493 284 aa11.96□□□□□ -0.49
USP54-201ENST00000339859 HIBADHP31937 336 aaKnown RBP11.96□□□□□ -0.49
USP54-201ENST00000339859 C20orf194Q5TEA3 1177 aa11.96□□□□□ -0.49
USP54-201ENST00000339859 GOLGA6L19H0YKK7 550 aa11.96□□□□□ -0.49
USP54-201ENST00000339859 USPL1Q5W0Q7 1092 aa11.96□□□□□ -0.49
USP54-201ENST00000339859 ASAP1Q9ULH1 1129 aa11.96□□□□□ -0.49
USP54-201ENST00000339859 HDAC1Q13547 482 aaPredicted RBP11.96□□□□□ -0.5
USP54-201ENST00000339859 MFSD6Q6ZSS7 791 aa11.96□□□□□ -0.5
USP54-201ENST00000339859 CERS3Q8IU89 383 aa11.96□□□□□ -0.5
USP54-201ENST00000339859 JMYQ8N9B5 988 aa11.96□□□□□ -0.5
USP54-201ENST00000339859 KDRP35968 1356 aa11.96□□□□□ -0.5
USP54-201ENST00000339859 PICALMQ13492 652 aa11.96□□□□□ -0.5
USP54-201ENST00000339859 TMEM131LA2VDJ0 1609 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 IQGAP1P46940 1657 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 PRPF40BQ6NWY9 871 aaKnown RBP11.95□□□□□ -0.5
USP54-201ENST00000339859 CEP89Q96ST8 783 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 KAT14Q9H8E8 782 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 SLC12A7Q9Y666 1083 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 SLC4A4Q9Y6R1 1079 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 TSPY2A6NKD2 308 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 KRT18P05783 430 aaKnown RBP11.95□□□□□ -0.5
USP54-201ENST00000339859 TFCP2Q12800 502 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 CASTP20810 708 aaKnown RBP11.95□□□□□ -0.5
USP54-201ENST00000339859 KIF5BP33176 963 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 FAM182BQ5T319 152 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 WDR78Q5VTH9 848 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 IQSEC3Q9UPP2 1182 aaPredicted RBP11.95□□□□□ -0.5
USP54-201ENST00000339859 TTC41PQ6P2S7 1318 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 SLIT1O75093 1534 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 MROH2AA6NES4 1674 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 DPY19L2Q6NUT2 758 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 NRXN1Q9ULB1 1477 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 BECN2A8MW95 431 aa11.95□□□□□ -0.5
USP54-201ENST00000339859 EYA2O00167 538 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 TRAF1Q13077 416 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 ARHGAP27Q6ZUM4 889 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 KRT23Q9C075 422 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 PDIA4P13667 645 aaKnown RBP11.94□□□□□ -0.5
USP54-201ENST00000339859 PAG1Q9NWQ8 432 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 TMC4Q7Z404 712 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 HELBQ8NG08 1087 aaPredicted RBP11.94□□□□□ -0.5
USP54-201ENST00000339859 VWDEQ8N2E2 1590 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 TSPY3P0CV98 308 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 TSPY8P0CW00 308 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 CTSWP56202 376 aa11.94□□□□□ -0.5
USP54-201ENST00000339859 GZF1Q9H116 711 aaPredicted RBP11.94□□□□□ -0.5
USP54-201ENST00000339859 IFIT3O14879 490 aaKnown RBP11.93□□□□□ -0.5
USP54-201ENST00000339859 PPIP5K2O43314 1243 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 GCKRQ14397 625 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 VSIG10Q8N0Z9 540 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 DDX49Q9Y6V7 483 aaKnown RBP11.93□□□□□ -0.5
USP54-201ENST00000339859 TPM3P06753 285 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 ATP2B1P20020 1258 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 WDR66Q8TBY9 1149 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 HMG20BQ9P0W2 317 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 PA2G4Q9UQ80 394 aaKnown RBP11.93□□□□□ -0.5
USP54-201ENST00000339859 G2E3Q7L622 706 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 CCDC12Q8WUD4 166 aaPredicted RBP11.93□□□□□ -0.5
USP54-201ENST00000339859 CNNM2Q9H8M5 875 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms