RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 SPRYD3Q8NCJ5 442 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 SSH3Q8TE77 659 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 NRXN2Q9P2S2 1712 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 ARFGEF1Q9Y6D6 1849 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 BTBD11A6QL63 1104 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 MX1P20591 662 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 POLA2Q14181 598 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 G2E3Q7L622 706 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 PIAS4Q8N2W9 510 aaPredicted RBP13.09□□□□□ -0.31
RTN3-201ENST00000338850 PPP1R9BQ96SB3 815 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 ESYT1Q9BSJ8 1104 aa13.09□□□□□ -0.31
RTN3-201ENST00000338850 A1BGP04217 495 aa13.08□□□□□ -0.32
RTN3-201ENST00000338850 IL6STP40189 918 aaPredicted RBP13.08□□□□□ -0.32
RTN3-201ENST00000338850 CCDC173Q0VFZ6 552 aa13.08□□□□□ -0.32
RTN3-201ENST00000338850 C9orf131Q5VYM1 1079 aa13.08□□□□□ -0.32
RTN3-201ENST00000338850 OTUD7AQ8TE49 926 aaPredicted RBP13.08□□□□□ -0.32
RTN3-201ENST00000338850 HDAC5Q9UQL6 1122 aa13.08□□□□□ -0.32
RTN3-201ENST00000338850 AFDNP55196 1824 aaKnown RBP13.08□□□□□ -0.32
RTN3-201ENST00000338850 CARMIL3Q8ND23 1372 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 MTX1Q13505 466 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 HS1BP3Q53T59 392 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 HSP90AB4PQ58FF6 505 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 TBC1D9BQ66K14 1250 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 BICDL1Q6ZP65 573 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 C16orf71Q8IYS4 520 aaPredicted RBP13.07□□□□□ -0.32
RTN3-201ENST00000338850 TBC1D2BQ9UPU7 963 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 ZNF330Q9Y3S2 320 aaPredicted RBP13.07□□□□□ -0.32
RTN3-201ENST00000338850 SCN7AQ01118 1682 aa13.07□□□□□ -0.32
RTN3-201ENST00000338850 MBD3O95983 291 aa13.06□□□□□ -0.32
RTN3-201ENST00000338850 FKBP5Q13451 457 aaPredicted RBP13.06□□□□□ -0.32
RTN3-201ENST00000338850 RTN4Q9NQC3 1192 aaKnown RBP13.06□□□□□ -0.32
RTN3-201ENST00000338850 USP16Q9Y5T5 823 aa13.06□□□□□ -0.32
RTN3-201ENST00000338850 PRAMEF22A3QJZ6 481 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 CAMTA2O94983 1202 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 HSPA6P17066 643 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 CHMLP26374 656 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 C2CD5Q86YS7 1000 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 NMRK2Q9NPI5 230 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 RRAGDQ9NQL2 400 aaPredicted RBP13.05□□□□□ -0.32
RTN3-201ENST00000338850 LMBRD1Q9NUN5 540 aa13.05□□□□□ -0.32
RTN3-201ENST00000338850 F6X3S4 739 aa13.04□□□□□ -0.32
RTN3-201ENST00000338850 SMARCA5O60264 1052 aaPredicted RBP13.04□□□□□ -0.32
RTN3-201ENST00000338850 SNRPA1P09661 255 aaKnown RBP13.04□□□□□ -0.32
RTN3-201ENST00000338850 UBTFL1P0CB47 393 aaPredicted RBP13.04□□□□□ -0.32
RTN3-201ENST00000338850 PRR5LQ6MZQ0 368 aa13.04□□□□□ -0.32
RTN3-201ENST00000338850 USP44Q9H0E7 712 aa13.04□□□□□ -0.32
RTN3-201ENST00000338850 RNF181Q9P0P0 153 aa13.04□□□□□ -0.32
RTN3-201ENST00000338850 TTC41PQ6P2S7 1318 aa13.04□□□□□ -0.32
RTN3-201ENST00000338850 DLEC1Q9Y238 1755 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 H0YIN7 160 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 ALDH1L1O75891 902 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 BRD1O95696 1058 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 PIP4K2AP48426 406 aaPredicted RBP13.03□□□□□ -0.32
RTN3-201ENST00000338850 RASSF7Q02833 373 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 HDGFL1Q5TGJ6 251 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 SLC4A10Q6U841 1118 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 DZIP3Q86Y13 1208 aaKnown RBP13.03□□□□□ -0.32
RTN3-201ENST00000338850 TTLL6Q8N841 843 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 KIF1BPQ96EK5 621 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 BRIP1Q9BX63 1249 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 PANK2Q9BZ23 570 aa13.03□□□□□ -0.32
RTN3-201ENST00000338850 GZF1Q9H116 711 aaPredicted RBP13.03□□□□□ -0.32
RTN3-201ENST00000338850 DDX49Q9Y6V7 483 aaKnown RBP13.03□□□□□ -0.32
RTN3-201ENST00000338850 PNMA6EA0A0J9YXQ4 647 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 PDIA4P13667 645 aaKnown RBP13.02□□□□□ -0.33
RTN3-201ENST00000338850 HSPA4P34932 840 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 EIF4A1P60842 406 aaKnown RBP13.02□□□□□ -0.33
RTN3-201ENST00000338850 GAS2L3Q86XJ1 694 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 CCDC24Q8N4L8 307 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 LRRFIP2Q9Y608 721 aaKnown RBP13.02□□□□□ -0.33
RTN3-201ENST00000338850 RAD50Q92878 1312 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 LAMB4A4D0S4 1761 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 CEP350Q5VT06 3117 aa13.02□□□□□ -0.33
RTN3-201ENST00000338850 ESPNB1AK53 854 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 NBPF26B4DH59 902 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 TOMM70O94826 608 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 PDE6BP35913 854 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 PRELPP51888 382 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 NBPF10Q6P3W6 841 aaKnown RBP13.01□□□□□ -0.33
RTN3-201ENST00000338850 NBPF15Q8N660 670 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 ANP32BQ92688 251 aaKnown RBP13.01□□□□□ -0.33
RTN3-201ENST00000338850 TMX3Q96JJ7 454 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 SETDB2Q96T68 719 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 EXOC6BQ9Y2D4 811 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 BCORQ6W2J9 1755 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 ANKRD31Q8N7Z5 1873 aa13.01□□□□□ -0.33
RTN3-201ENST00000338850 UTYO14607 1347 aa13□□□□□ -0.33
RTN3-201ENST00000338850 NFKBIEO00221 500 aa13□□□□□ -0.33
RTN3-201ENST00000338850 NASPP49321 788 aaPredicted RBP13□□□□□ -0.33
RTN3-201ENST00000338850 BEND3Q5T5X7 828 aa13□□□□□ -0.33
RTN3-201ENST00000338850 CLEC4GQ6UXB4 293 aa13□□□□□ -0.33
RTN3-201ENST00000338850 CNBD1Q8NA66 436 aa13□□□□□ -0.33
RTN3-201ENST00000338850 TMEM87AQ8NBN3 555 aa13□□□□□ -0.33
RTN3-201ENST00000338850 PDLIM2Q96JY6 352 aa13□□□□□ -0.33
RTN3-201ENST00000338850 MIS18AQ9NYP9 233 aa13□□□□□ -0.33
RTN3-201ENST00000338850 ZDHHC9Q9Y397 364 aa13□□□□□ -0.33
RTN3-201ENST00000338850 SBF1O95248 1867 aa12.99□□□□□ -0.33
RTN3-201ENST00000338850 ZC3H4Q9UPT8 1303 aaKnown RBP12.99□□□□□ -0.33
RTN3-201ENST00000338850 LMNB1P20700 586 aa12.99□□□□□ -0.33
RTN3-201ENST00000338850 ERC1Q8IUD2 1116 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms