RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 BBOX1O75936 387 aa20.18■□□□□ 0.82
CLN3-201ENST00000333496 LINS1Q8NG48 757 aa20.18■□□□□ 0.82
CLN3-201ENST00000333496 ZNF277Q9NRM2 450 aaPredicted RBP20.18■□□□□ 0.82
CLN3-201ENST00000333496 H7C1W4 665 aa20.17■□□□□ 0.82
CLN3-201ENST00000333496 GCKRQ14397 625 aa20.17■□□□□ 0.82
CLN3-201ENST00000333496 SSH1Q8WYL5 1049 aa20.17■□□□□ 0.82
CLN3-201ENST00000333496 CELF1Q92879 486 aaKnown RBP20.17■□□□□ 0.82
CLN3-201ENST00000333496 PSMD1Q99460 953 aa20.17■□□□□ 0.82
CLN3-201ENST00000333496 BEND3Q5T5X7 828 aa20.16■□□□□ 0.82
CLN3-201ENST00000333496 KIF3CO14782 793 aa20.16■□□□□ 0.82
CLN3-201ENST00000333496 CASP7P55210 303 aa20.16■□□□□ 0.82
CLN3-201ENST00000333496 HNRNPUQ00839 825 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLN3-201ENST00000333496 SP8Q8IXZ3 490 aa20.16■□□□□ 0.82
CLN3-201ENST00000333496 NMRK2Q9NPI5 230 aa20.16■□□□□ 0.82
CLN3-201ENST00000333496 COL4A5P29400 1685 aa20.15■□□□□ 0.82
CLN3-201ENST00000333496 HSP90B1P14625 803 aaKnown RBP20.15■□□□□ 0.82
CLN3-201ENST00000333496 GRIPAP1Q4V328 841 aa20.15■□□□□ 0.82
CLN3-201ENST00000333496 UBE3BQ7Z3V4 1068 aa20.15■□□□□ 0.82
CLN3-201ENST00000333496 BCL2L13Q9BXK5 485 aa20.15■□□□□ 0.82
CLN3-201ENST00000333496 SEC31BQ9NQW1 1179 aa20.15■□□□□ 0.82
CLN3-201ENST00000333496 SPEF2Q9C093 1822 aa20.14■□□□□ 0.82
CLN3-201ENST00000333496 GLTPD2A6NH11 291 aa20.14■□□□□ 0.81
CLN3-201ENST00000333496 IARSP41252 1262 aaKnown RBP20.14■□□□□ 0.81
CLN3-201ENST00000333496 ALDH1L2Q3SY69 923 aa20.13■□□□□ 0.81
CLN3-201ENST00000333496 CCDC85AQ96PX6 553 aaPredicted RBP20.13■□□□□ 0.81
CLN3-201ENST00000333496 LTBP1Q14766 1721 aa20.13■□□□□ 0.81
CLN3-201ENST00000333496 KDM2BQ8NHM5 1336 aa20.13■□□□□ 0.81
CLN3-201ENST00000333496 DUOX1Q9NRD9 1551 aa20.13■□□□□ 0.81
CLN3-201ENST00000333496 CCDC152Q4G0S7 254 aa20.13■□□□□ 0.81
CLN3-201ENST00000333496 TTLL11Q8NHH1 800 aa20.13■□□□□ 0.81
CLN3-201ENST00000333496 WDR90Q96KV7 1748 aa20.12■□□□□ 0.81
CLN3-201ENST00000333496 CT47B1P0C2W7 299 aaPredicted RBP20.12■□□□□ 0.81
CLN3-201ENST00000333496 CTSWP56202 376 aa20.12■□□□□ 0.81
CLN3-201ENST00000333496 RPS8P62241 208 aaKnown RBP20.12■□□□□ 0.81
CLN3-201ENST00000333496 SLC4A10Q6U841 1118 aa20.11■□□□□ 0.81
CLN3-201ENST00000333496 TMC4Q7Z404 712 aa20.11■□□□□ 0.81
CLN3-201ENST00000333496 PLA2G12BQ9BX93 195 aa20.11■□□□□ 0.81
CLN3-201ENST00000333496 RTFDC1Q9BY42 306 aaPredicted RBP20.11■□□□□ 0.81
CLN3-201ENST00000333496 RRAGCQ9HB90 399 aa20.11■□□□□ 0.81
CLN3-201ENST00000333496 PTPRCP08575 1304 aa20.11■□□□□ 0.81
CLN3-201ENST00000333496 C1QTNF8P60827 252 aa20.1■□□□□ 0.81
CLN3-201ENST00000333496 MPNDQ8N594 471 aa20.1■□□□□ 0.81
CLN3-201ENST00000333496 TMX4Q9H1E5 349 aaPredicted RBP20.1■□□□□ 0.81
CLN3-201ENST00000333496 DPP8Q6V1X1 898 aaPredicted RBP20.09■□□□□ 0.81
CLN3-201ENST00000333496 GREM2Q9H772 168 aa20.09■□□□□ 0.81
CLN3-201ENST00000333496 SMC4Q9NTJ3 1288 aa20.09■□□□□ 0.81
CLN3-201ENST00000333496 DPY19L2Q6NUT2 758 aa20.09■□□□□ 0.81
CLN3-201ENST00000333496 POTECB2RU33 542 aa20.08■□□□□ 0.8
CLN3-201ENST00000333496 FZD9O00144 591 aa20.08■□□□□ 0.8
CLN3-201ENST00000333496 ALDH1L1O75891 902 aa20.08■□□□□ 0.8
CLN3-201ENST00000333496 DDNO94850 711 aaPredicted RBP20.08■□□□□ 0.8
CLN3-201ENST00000333496 SRCIN1Q9C0H9 1055 aa20.08■□□□□ 0.8
CLN3-201ENST00000333496 ZNF541Q9H0D2 1346 aa20.08■□□□□ 0.8
CLN3-201ENST00000333496 RTL9Q8NET4 1388 aa20.07■□□□□ 0.8
CLN3-201ENST00000333496 CENPBP07199 599 aaPredicted RBP20.07■□□□□ 0.8
CLN3-201ENST00000333496 CSF1RP07333 972 aa20.07■□□□□ 0.8
CLN3-201ENST00000333496 AOC3Q16853 763 aa20.07■□□□□ 0.8
CLN3-201ENST00000333496 GRM8O00222 908 aa20.06■□□□□ 0.8
CLN3-201ENST00000333496 RARSP54136 660 aaKnown RBP20.06■□□□□ 0.8
CLN3-201ENST00000333496 BRPF1P55201 1214 aaPredicted RBP20.06■□□□□ 0.8
CLN3-201ENST00000333496 LARGE2Q8N3Y3 721 aa20.06■□□□□ 0.8
CLN3-201ENST00000333496 SCN4AP35499 1836 aa20.06■□□□□ 0.8
CLN3-201ENST00000333496 PPIP5K2O43314 1243 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 GPSM2P81274 684 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 FOXO4P98177 505 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 SUPT20HQ8NEM7 779 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 JDP2Q8WYK2 163 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 VPS33BQ9H267 617 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 NSFL1CQ9UNZ2 370 aaKnown RBP20.05■□□□□ 0.8
CLN3-201ENST00000333496 ZBED9Q6R2W3 1325 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 ANKRD18AQ8IVF6 992 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 POLLQ9UGP5 575 aa20.05■□□□□ 0.8
CLN3-201ENST00000333496 TOMM70O94826 608 aa20.04■□□□□ 0.8
CLN3-201ENST00000333496 VEGFAP15692 232 aaPredicted RBP20.04■□□□□ 0.8
CLN3-201ENST00000333496 KIAA2012Q0VF49 1180 aa20.04■□□□□ 0.8
CLN3-201ENST00000333496 FAM161AQ3B820 660 aa20.04■□□□□ 0.8
CLN3-201ENST00000333496 EPHA10Q5JZY3 1008 aa20.04■□□□□ 0.8
CLN3-201ENST00000333496 CDC5LQ99459 802 aaKnown RBP20.04■□□□□ 0.8
CLN3-201ENST00000333496 C9orf78Q9NZ63 289 aaPredicted RBP20.04■□□□□ 0.8
CLN3-201ENST00000333496 NOB1Q9ULX3 412 aaKnown RBP20.04■□□□□ 0.8
CLN3-201ENST00000333496 NBPF7P0C2Y1 421 aaPredicted RBP20.03■□□□□ 0.8
CLN3-201ENST00000333496 ITGA6P23229 1130 aa20.02■□□□□ 0.8
CLN3-201ENST00000333496 PODXL2Q9NZ53 605 aa20.02■□□□□ 0.8
CLN3-201ENST00000333496 UTYO14607 1347 aa20.02■□□□□ 0.8
CLN3-201ENST00000333496 NIM1KQ8IY84 436 aa20.02■□□□□ 0.79
CLN3-201ENST00000333496 TBC1D16Q8TBP0 767 aa20.02■□□□□ 0.79
CLN3-201ENST00000333496 KAZALD1Q96I82 304 aa20.02■□□□□ 0.79
CLN3-201ENST00000333496 L3MBTL3Q96JM7 780 aaPredicted RBP20.02■□□□□ 0.79
CLN3-201ENST00000333496 A0A1B0GUL6 1792 aa20.01■□□□□ 0.79
CLN3-201ENST00000333496 BSDC1Q9NW68 430 aaPredicted RBP20.01■□□□□ 0.79
CLN3-201ENST00000333496 C6orf229H3BNL8 230 aa20■□□□□ 0.79
CLN3-201ENST00000333496 LMBR1LQ6UX01 489 aa20■□□□□ 0.79
CLN3-201ENST00000333496 SUCLG2Q96I99 432 aa20■□□□□ 0.79
CLN3-201ENST00000333496 GPR101Q96P66 508 aaPredicted RBP20■□□□□ 0.79
CLN3-201ENST00000333496 MINPP1Q9UNW1 487 aa20■□□□□ 0.79
CLN3-201ENST00000333496 SCN9AQ15858 1988 aa19.99■□□□□ 0.79
CLN3-201ENST00000333496 EIF6P56537 245 aaKnown RBP19.99■□□□□ 0.79
CLN3-201ENST00000333496 WASHC4Q2M389 1173 aa19.99■□□□□ 0.79
CLN3-201ENST00000333496 GPC2Q8N158 579 aa19.99■□□□□ 0.79
CLN3-201ENST00000333496 USP44Q9H0E7 712 aa19.99■□□□□ 0.79
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