RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 GDAP1L1Q96MZ0 367 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 TDRD9Q8NDG6 1382 aaKnown RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 INTS8Q75QN2 995 aaKnown RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 RBM42Q9BTD8 480 aaKnown RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 SSH1Q8WYL5 1049 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 RNASE9P60153 205 aaKnown RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 TTC14Q96N46 770 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 ZNF644Q9H582 1327 aaPredicted RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 NEK11Q8NG66 645 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 ERBINQ96RT1 1412 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 ZSCAN22P10073 491 aaPredicted RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 UBXN1Q04323 297 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 UAP1Q16222 522 aaPredicted RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 UVSSAQ2YD98 709 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 IDEP14735 1019 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 WHAMMP3Q1A5X7 153 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 RTL1A6NKG5 1358 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 IFNKQ9P0W0 207 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 MRVI1Q9Y6F6 885 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 SETSIPP0DME0 302 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 RRS1Q15050 365 aaKnown RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 LONRF3Q496Y0 759 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 PLEKHH2Q8IVE3 1493 aa9.94□□□□□ -0.82
USF3-201ENST00000316407 GKAP1Q5VSY0 366 aaPredicted RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.94□□□□□ -0.82
USF3-201ENST00000316407 COG7P83436 770 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 GOLGA6CA6NDK9 693 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 GOLGA6DP0CG33 693 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 MRPS9P82933 396 aaKnown RBP9.93□□□□□ -0.82
USF3-201ENST00000316407 GOLGA6AQ9NYA3 693 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 OAS2P29728 719 aaKnown RBP9.93□□□□□ -0.82
USF3-201ENST00000316407 HAND2P61296 217 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 IGHDP01880 384 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 SLFN5Q08AF3 891 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 LMNTD2Q8IXW0 634 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 WHAMMQ8TF30 809 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 F6X3S4 739 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 TMX3Q96JJ7 454 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 RANBP6O60518 1105 aaKnown RBP9.93□□□□□ -0.82
USF3-201ENST00000316407 LRRC2Q9BYS8 371 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 TSNAXIP1Q2TAA8 658 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 FERMT2Q96AC1 680 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 CIB2O75838 187 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 RRAGBQ5VZM2 374 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 SMC1BQ8NDV3 1235 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 TXNDC9O14530 226 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 SYCP3Q8IZU3 236 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 DACT1Q9NYF0 836 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 FAM170AA1A519 330 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 NEDD9Q14511 834 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 IFT74Q96LB3 600 aa9.93□□□□□ -0.82
USF3-201ENST00000316407 PSMD6Q15008 389 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 TCEANC2Q96MN5 208 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 GBP5Q96PP8 586 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 SELENOOQ9BVL4 669 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 MAP3K9P80192 1104 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 STRN4Q9NRL3 753 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 CCDC194A0A1B0GVG4 234 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 TACC1O75410 805 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 PLEKHA4Q9H4M7 779 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 RABGAP1Q9Y3P9 1069 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 ZBTB12Q9Y330 459 aaPredicted RBP9.92□□□□□ -0.82
USF3-201ENST00000316407 LRRC9Q6ZRR7 1453 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 E7EVH7 732 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 CFAP157Q5JU67 520 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 TCHPQ9BT92 498 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 AP1ARQ63HQ0 302 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 LCA5Q86VQ0 697 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 UTP14AQ9BVJ6 771 aaKnown RBP9.92□□□□□ -0.82
USF3-201ENST00000316407 MRFAP1Q9Y605 127 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 ZNF131P52739 623 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 CCDC102BQ68D86 513 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 POTEDQ86YR6 584 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 MYRIPQ8NFW9 859 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 TRIM27P14373 513 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 LRPPRCP42704 1394 aaKnown RBP9.92□□□□□ -0.82
USF3-201ENST00000316407 MYOM3Q5VTT5 1437 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 WDHD1O75717 1129 aaPredicted RBP9.92□□□□□ -0.82
USF3-201ENST00000316407 RARSP54136 660 aaKnown RBP9.92□□□□□ -0.82
USF3-201ENST00000316407 ABTB2Q8N961 1025 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 NAPBQ9H115 298 aa9.92□□□□□ -0.82
USF3-201ENST00000316407 BTBD11A6QL63 1104 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 CCT6AP40227 531 aaKnown RBP9.91□□□□□ -0.82
USF3-201ENST00000316407 HS1BP3Q53T59 392 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 MCM10Q7L590 875 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 ZSCAN29Q8IWY8 852 aaPredicted RBP9.91□□□□□ -0.82
USF3-201ENST00000316407 MCUR1Q96AQ8 359 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 TRIM7Q9C029 511 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 CAVIN2O95810 425 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 ZSCAN25Q6NSZ9 544 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 FCHSD2O94868 740 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 VAV2P52735 878 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 SYNCQ9H7C4 482 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 STAT6P42226 847 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 ZSCAN26Q16670 478 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 VCX3BQ9H321 246 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 TOP2AP11388 1531 aaKnown RBP9.91□□□□□ -0.82
USF3-201ENST00000316407 GOLGA8AA7E2F4 631 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 KRT86O43790 486 aa9.91□□□□□ -0.82
USF3-201ENST00000316407 ZNF365Q70YC5 407 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms