RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 HSP90AB3PQ58FF7 597 aa8.63□□□□□ -1.03
PTCD2-201ENST00000308077 NPM2Q86SE8 214 aaKnown RBP8.63□□□□□ -1.03
PTCD2-201ENST00000308077 PLEKHM2Q8IWE5 1019 aa8.63□□□□□ -1.03
PTCD2-201ENST00000308077 NOP58Q9Y2X3 529 aaKnown RBP8.63□□□□□ -1.03
PTCD2-201ENST00000308077 MYH3P11055 1940 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 RPS6KA4O75676 772 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 PCCAP05165 728 aaPredicted RBP8.62□□□□□ -1.03
PTCD2-201ENST00000308077 RFX5P48382 616 aaPredicted RBP8.62□□□□□ -1.03
PTCD2-201ENST00000308077 FXR1P51114 621 aaKnown RBP eCLIP8.62□□□□□ -1.03
PTCD2-201ENST00000308077 SYNE4Q8N205 404 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 FAM89AQ96GI7 184 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 LRRCC1Q9C099 1032 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 BCL11AQ9H165 835 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 SALL3Q9BXA9 1300 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 GNPATO15228 680 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 LMBR1LQ6UX01 489 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 ZBTB38Q8NAP3 1195 aaPredicted RBP8.62□□□□□ -1.03
PTCD2-201ENST00000308077 KLHDC4Q8TBB5 520 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 RHPN1Q8TCX5 695 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 TUBGCP6Q96RT7 1819 aa8.62□□□□□ -1.03
PTCD2-201ENST00000308077 DDX60Q8IY21 1712 aaKnown RBP8.61□□□□□ -1.03
PTCD2-201ENST00000308077 RAB11FIP3O75154 756 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 BCL2L12Q9HB09 334 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 LAMB2P55268 1798 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 CDHR2Q9BYE9 1310 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 PTPN12Q05209 780 aaKnown RBP8.61□□□□□ -1.03
PTCD2-201ENST00000308077 SUSD4Q5VX71 490 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 PROM2Q8N271 834 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 PLA2G12BQ9BX93 195 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 IL1RAPL2Q9NP60 686 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 ZBTB47Q9UFB7 747 aaPredicted RBP8.61□□□□□ -1.03
PTCD2-201ENST00000308077 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.61□□□□□ -1.03
PTCD2-201ENST00000308077 COL24A1Q17RW2 1714 aa8.61□□□□□ -1.03
PTCD2-201ENST00000308077 GSPT1P15170 499 aaKnown RBP8.6□□□□□ -1.03
PTCD2-201ENST00000308077 SLC27A3Q5K4L6 730 aa8.6□□□□□ -1.03
PTCD2-201ENST00000308077 KIF1BPQ96EK5 621 aa8.6□□□□□ -1.03
PTCD2-201ENST00000308077 SIL1Q9H173 461 aa8.6□□□□□ -1.03
PTCD2-201ENST00000308077 COPRSQ9NQ92 184 aa8.6□□□□□ -1.03
PTCD2-201ENST00000308077 SRP68Q9UHB9 627 aaKnown RBP8.6□□□□□ -1.03
PTCD2-201ENST00000308077 TRMT112Q9UI30 125 aaKnown RBP8.6□□□□□ -1.03
PTCD2-201ENST00000308077 RTCBQ9Y3I0 505 aaKnown RBP8.6□□□□□ -1.03
PTCD2-201ENST00000308077 SASH1O94885 1247 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 HSP90AB4PQ58FF6 505 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 USPL1Q5W0Q7 1092 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 CLEC4GQ6UXB4 293 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 ARHGEF1Q92888 912 aaKnown RBP8.59□□□□□ -1.03
PTCD2-201ENST00000308077 AIDAQ96BJ3 306 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 NARFQ9UHQ1 456 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 NIP7Q9Y221 180 aaKnown RBP eCLIP8.59□□□□□ -1.03
PTCD2-201ENST00000308077 TNRC18O15417 2968 aaPredicted RBP8.59□□□□□ -1.03
PTCD2-201ENST00000308077 NTSR2O95665 410 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 CSF1RP07333 972 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 PDE1AP54750 535 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 OS9Q13438 667 aaPredicted RBP8.59□□□□□ -1.03
PTCD2-201ENST00000308077 TXNRD1Q16881 649 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 PARP10Q53GL7 1025 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 BMP2KLQ5H9B9 411 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 TTC22Q5TAA0 569 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 TSHZ3Q63HK5 1081 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 AK7Q96M32 723 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 MTFR1LQ9H019 292 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 PRDM6Q9NQX0 595 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 ZNF652Q9Y2D9 606 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 CHMP3Q9Y3E7 222 aa8.59□□□□□ -1.03
PTCD2-201ENST00000308077 FAM177BA6PVY3 158 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 IRS4O14654 1257 aaPredicted RBP8.58□□□□□ -1.04
PTCD2-201ENST00000308077 PLSCR1O15162 318 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 PHF14O94880 888 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 ZBTB7AO95365 584 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 G3BP1Q13283 466 aaKnown RBP eCLIP8.58□□□□□ -1.04
PTCD2-201ENST00000308077 TBC1D9BQ66K14 1250 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 NUTM1Q86Y26 1132 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 OSBPL3Q9H4L5 887 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 RGL2O15211 777 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 SEC24BO95487 1268 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 APBA3O96018 575 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 MX1P20591 662 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 CTSWP56202 376 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 ERC1Q8IUD2 1116 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 ZNF594Q96JF6 807 aaPredicted RBP8.58□□□□□ -1.04
PTCD2-201ENST00000308077 CCDC85AQ96PX6 553 aaPredicted RBP8.58□□□□□ -1.04
PTCD2-201ENST00000308077 UTP14AQ9BVJ6 771 aaKnown RBP8.58□□□□□ -1.04
PTCD2-201ENST00000308077 C10orf71Q711Q0 1435 aa8.58□□□□□ -1.04
PTCD2-201ENST00000308077 SH3TC1Q8TE82 1336 aa8.57□□□□□ -1.04
PTCD2-201ENST00000308077 USP42Q9H9J4 1324 aaKnown RBP8.57□□□□□ -1.04
PTCD2-201ENST00000308077 PDE8AO60658 829 aa8.57□□□□□ -1.04
PTCD2-201ENST00000308077 TRAPPC3LQ5T215 181 aa8.57□□□□□ -1.04
PTCD2-201ENST00000308077 ATG9AQ7Z3C6 839 aa8.57□□□□□ -1.04
PTCD2-201ENST00000308077 TTLL11Q8NHH1 800 aa8.57□□□□□ -1.04
PTCD2-201ENST00000308077 STAP2Q9UGK3 403 aa8.57□□□□□ -1.04
PTCD2-201ENST00000308077 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.56□□□□□ -1.04
PTCD2-201ENST00000308077 ZPR1O75312 459 aa8.56□□□□□ -1.04
PTCD2-201ENST00000308077 HCLS1P14317 486 aaPredicted RBP8.56□□□□□ -1.04
PTCD2-201ENST00000308077 BICDL1Q6ZP65 573 aa8.56□□□□□ -1.04
PTCD2-201ENST00000308077 GREM2Q9H772 168 aa8.56□□□□□ -1.04
PTCD2-201ENST00000308077 ATF5Q9Y2D1 282 aaPredicted RBP8.56□□□□□ -1.04
PTCD2-201ENST00000308077 COL4A1P02462 1669 aa8.56□□□□□ -1.04
PTCD2-201ENST00000308077 SPEF2Q9C093 1822 aa8.56□□□□□ -1.04
PTCD2-201ENST00000308077 RFC4P35249 363 aa8.56□□□□□ -1.04
PTCD2-201ENST00000308077 TFCP2Q12800 502 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms