RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PROSER2Q86WR7 435 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 ESYT1Q9BSJ8 1104 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 HSF2BPO75031 334 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 BMS1Q14692 1282 aaKnown RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC171Q6TFL3 1326 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 PAXBP1Q9Y5B6 917 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 ZSCAN22P10073 491 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 DCTPP1Q9H773 170 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 SPINK5Q9NQ38 1064 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 TTC31Q49AM3 519 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 FERMT3Q86UX7 667 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 USP25Q9UHP3 1055 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 GOLGA6L9A6NEM1 432 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 ATP2C2O75185 946 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 GRIPAP1Q4V328 841 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 SRRTQ9BXP5 876 aaKnown RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 FKBP4Q02790 459 aaKnown RBP eCLIP11.32□□□□□ -0.6
COL6A3-201ENST00000295550 RBM27Q9P2N5 1060 aaKnown RBP11.32□□□□□ -0.6
COL6A3-201ENST00000295550 PPP1R42Q7Z4L9 355 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 RSPH14Q9UHP6 348 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 AKAP2Q9Y2D5 859 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 SOS1Q07889 1333 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-201ENST00000295550 TMC6Q7Z403 805 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 EHBP1Q8NDI1 1231 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 FERP16591 822 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC6Q16204 474 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 PPP1R14CQ8TAE6 165 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 SEC24BO95487 1268 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 IKBKGQ9Y6K9 419 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 ACEP12821 1306 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 KIF24Q5T7B8 1368 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 PLEKHM2Q8IWE5 1019 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 FBF1Q8TES7 1133 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 SEC63Q9UGP8 760 aaKnown RBP11.32□□□□□ -0.6
COL6A3-201ENST00000295550 ZNF76P36508 570 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 DNAI2Q9GZS0 605 aa11.32□□□□□ -0.6
COL6A3-201ENST00000295550 CPSF2Q9P2I0 782 aaKnown RBP11.32□□□□□ -0.6
COL6A3-201ENST00000295550 CEP85Q6P2H3 762 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 PIBF1Q8WXW3 757 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 CEP126Q9P2H0 1117 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 JADE2Q9NQC1 790 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 TTC41PQ6P2S7 1318 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 TSHZ3Q63HK5 1081 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 SCLT1Q96NL6 688 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 MEIS3Q99687 375 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 PHAXQ9H814 394 aaKnown RBP11.31□□□□□ -0.6
COL6A3-201ENST00000295550 CEP57Q86XR8 500 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 C8orf58Q8NAV2 365 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 PANK2Q9BZ23 570 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 POLKQ9UBT6 870 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 CTNNA2P26232 953 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 CKAP2LQ8IYA6 745 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 MAP3K5Q99683 1374 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 AOX1Q06278 1338 aa11.31□□□□□ -0.6
COL6A3-201ENST00000295550 SREK1Q8WXA9 508 aaKnown RBP11.3□□□□□ -0.6
COL6A3-201ENST00000295550 INTS4Q96HW7 963 aaKnown RBP11.3□□□□□ -0.6
COL6A3-201ENST00000295550 ARFGAP3Q9NP61 516 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 A0A1W2PRG0 241 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC150Q8NCX0 1101 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 VAMP4O75379 141 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC121Q6ZUS5 278 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 MAP3K2Q9Y2U5 619 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 MYH10P35580 1976 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 HOMER2Q9NSB8 354 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 TNNQ9UQP3 1299 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 E9PCH4 1651 aa11.3□□□□□ -0.6
COL6A3-201ENST00000295550 MXRA7P84157 204 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 KLHL34Q8N239 644 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 PRPF4BQ13523 1007 aaKnown RBP11.29□□□□□ -0.6
COL6A3-201ENST00000295550 USHBP1Q8N6Y0 703 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 UBA5Q9GZZ9 404 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 BOLA2Q9H3K6 86 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 ZWINTO95229 277 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 KIF4AO95239 1232 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 USP26Q9BXU7 913 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 CEP83Q9Y592 693 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 COMMD10Q9Y6G5 202 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 EFCAB6Q5THR3 1501 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 CCDC12Q8WUD4 166 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-201ENST00000295550 EIF4A2Q14240 407 aaKnown RBP11.29□□□□□ -0.6
COL6A3-201ENST00000295550 RHPN1Q8TCX5 695 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 AMOTL2Q9Y2J4 779 aa11.29□□□□□ -0.6
COL6A3-201ENST00000295550 NEO1Q92859 1461 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 ATP8B2P98198 1209 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 AIDAQ96BJ3 306 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 C8orf76Q96K31 380 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 FAM114A1Q8IWE2 563 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 ZSCAN16Q9H4T2 348 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-201ENST00000295550 CNPY2Q9Y2B0 182 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 NOL3O60936 208 aaKnown RBP11.28□□□□□ -0.6
COL6A3-201ENST00000295550 PHF8Q9UPP1 1060 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 TOM1L2Q6ZVM7 507 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 TSNARE1Q96NA8 513 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 GTPBP4Q9BZE4 634 aaKnown RBP11.28□□□□□ -0.6
COL6A3-201ENST00000295550 TDRD12Q587J7 1177 aaKnown RBP11.28□□□□□ -0.6
COL6A3-201ENST00000295550 MPHOSPH8Q99549 860 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 PAIP2Q9BPZ3 127 aaKnown RBP11.28□□□□□ -0.6
COL6A3-201ENST00000295550 RSRC1Q96IZ7 334 aaKnown RBP11.28□□□□□ -0.6
COL6A3-201ENST00000295550 MYD88Q99836 296 aa11.28□□□□□ -0.6
COL6A3-201ENST00000295550 RBM42Q9BTD8 480 aaKnown RBP11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms