RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SSFA2P28290 1259 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 MSL1Q68DK7 614 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 CLASRPQ8N2M8 674 aaKnown RBP20.48■□□□□ 0.87
CPSF4-201ENST00000292476 COPRSQ9NQ92 184 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 CDHR2Q9BYE9 1310 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 GSPT1P15170 499 aaKnown RBP20.48■□□□□ 0.87
CPSF4-201ENST00000292476 HLFQ16534 295 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 PARP10Q53GL7 1025 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 CLEC4GQ6UXB4 293 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 NLRP10Q86W26 655 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 PLA2G12BQ9BX93 195 aa20.48■□□□□ 0.87
CPSF4-201ENST00000292476 C16orf71Q8IYS4 520 aaPredicted RBP20.47■□□□□ 0.87
CPSF4-201ENST00000292476 DDX11L8A8MPP1 907 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 RPS6KA4O75676 772 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 MX1P20591 662 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 PDE1AP54750 535 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 FOXO4P98177 505 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 EPHA10Q5JZY3 1008 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 LMBR1LQ6UX01 489 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 ZNF34Q8IZ26 560 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 STAP2Q9UGK3 403 aa20.46■□□□□ 0.87
CPSF4-201ENST00000292476 TRAPPC3LQ5T215 181 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 L1TD1Q5T7N2 865 aaKnown RBP20.45■□□□□ 0.86
CPSF4-201ENST00000292476 SGIP1Q9BQI5 828 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 ANKRD36CQ5JPF3 1778 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 CAMTA2O94983 1202 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 PTMSP20962 102 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 CASC1Q6TDU7 716 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 GPATCH3Q96I76 525 aa20.45■□□□□ 0.86
CPSF4-201ENST00000292476 TRMT112Q9UI30 125 aaKnown RBP20.44■□□□□ 0.86
CPSF4-201ENST00000292476 FBXO3Q9UK99 471 aa20.44■□□□□ 0.86
CPSF4-201ENST00000292476 SALL3Q9BXA9 1300 aa20.44■□□□□ 0.86
CPSF4-201ENST00000292476 GPTP24298 496 aa20.43■□□□□ 0.86
CPSF4-201ENST00000292476 JARID2Q92833 1246 aaPredicted RBP20.43■□□□□ 0.86
CPSF4-201ENST00000292476 ARHGEF1Q92888 912 aaKnown RBP20.43■□□□□ 0.86
CPSF4-201ENST00000292476 C4AP0C0L4 1744 aa20.43■□□□□ 0.86
CPSF4-201ENST00000292476 NUP98P52948 1817 aa20.43■□□□□ 0.86
CPSF4-201ENST00000292476 COL24A1Q17RW2 1714 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 K7ELQ4 463 aaPredicted RBP20.42■□□□□ 0.86
CPSF4-201ENST00000292476 RFX5P48382 616 aaPredicted RBP20.42■□□□□ 0.86
CPSF4-201ENST00000292476 RABEP1Q15276 862 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 IL1RAPL2Q9NP60 686 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 PA2G4Q9UQ80 394 aaKnown RBP20.42■□□□□ 0.86
CPSF4-201ENST00000292476 CHMP3Q9Y3E7 222 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 TTC41PQ6P2S7 1318 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 POLD1P28340 1107 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 PTPN12Q05209 780 aaKnown RBP20.42■□□□□ 0.86
CPSF4-201ENST00000292476 CCDC57Q2TAC2 916 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 FAM89AQ96GI7 184 aa20.42■□□□□ 0.86
CPSF4-201ENST00000292476 ERC2O15083 957 aa20.41■□□□□ 0.86
CPSF4-201ENST00000292476 IFIT2P09913 472 aaKnown RBP20.41■□□□□ 0.86
CPSF4-201ENST00000292476 ADRA2BP18089 450 aa20.41■□□□□ 0.86
CPSF4-201ENST00000292476 RFC4P35249 363 aa20.41■□□□□ 0.86
CPSF4-201ENST00000292476 OTUD7AQ8TE49 926 aaPredicted RBP20.41■□□□□ 0.86
CPSF4-201ENST00000292476 UTP14AQ9BVJ6 771 aaKnown RBP20.41■□□□□ 0.86
CPSF4-201ENST00000292476 CSF1RP07333 972 aa20.4■□□□□ 0.86
CPSF4-201ENST00000292476 PDE8AO60658 829 aa20.39■□□□□ 0.86
CPSF4-201ENST00000292476 SPRYD3Q8NCJ5 442 aa20.39■□□□□ 0.86
CPSF4-201ENST00000292476 NARFQ9UHQ1 456 aa20.39■□□□□ 0.86
CPSF4-201ENST00000292476 SH3TC1Q8TE82 1336 aa20.39■□□□□ 0.85
CPSF4-201ENST00000292476 USP42Q9H9J4 1324 aaKnown RBP20.39■□□□□ 0.85
CPSF4-201ENST00000292476 IRS4O14654 1257 aaPredicted RBP20.38■□□□□ 0.85
CPSF4-201ENST00000292476 ZPR1O75312 459 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 CIAO1O76071 339 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 IL15P40933 162 aaPredicted RBP20.38■□□□□ 0.85
CPSF4-201ENST00000292476 RAB3GAP1Q15042 981 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 KLHL34Q8N239 644 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 SIL1Q9H173 461 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 SRP68Q9UHB9 627 aaKnown RBP20.38■□□□□ 0.85
CPSF4-201ENST00000292476 NIP7Q9Y221 180 aaKnown RBP eCLIP20.38■□□□□ 0.85
CPSF4-201ENST00000292476 SASH1O94885 1247 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 IFIT5Q13325 482 aaKnown RBP20.38■□□□□ 0.85
CPSF4-201ENST00000292476 GBP4Q96PP9 640 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 USP26Q9BXU7 913 aa20.38■□□□□ 0.85
CPSF4-201ENST00000292476 ISY1Q9ULR0 285 aaKnown RBP20.38■□□□□ 0.85
CPSF4-201ENST00000292476 UBN2Q6ZU65 1347 aa20.37■□□□□ 0.85
CPSF4-201ENST00000292476 GLRX3O76003 335 aaKnown RBP20.37■□□□□ 0.85
CPSF4-201ENST00000292476 REC8O95072 547 aa20.37■□□□□ 0.85
CPSF4-201ENST00000292476 SDSP20132 328 aa20.37■□□□□ 0.85
CPSF4-201ENST00000292476 NUTM1Q86Y26 1132 aa20.37■□□□□ 0.85
CPSF4-201ENST00000292476 FHDC1Q9C0D6 1143 aaPredicted RBP20.37■□□□□ 0.85
CPSF4-201ENST00000292476 TAF7LQ5H9L4 462 aa20.36■□□□□ 0.85
CPSF4-201ENST00000292476 IL27Q8NEV9 243 aa20.36■□□□□ 0.85
CPSF4-201ENST00000292476 ECHDC1Q9NTX5 307 aa20.36■□□□□ 0.85
CPSF4-201ENST00000292476 BCORQ6W2J9 1755 aa20.36■□□□□ 0.85
CPSF4-201ENST00000292476 GYS1P13807 737 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 CTSWP56202 376 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 AACSQ86V21 672 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 GPR108Q9NPR9 543 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 BRPF3Q9ULD4 1205 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 EYA2O00167 538 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 SUSD4Q5VX71 490 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 CLEC17AQ6ZS10 378 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 KLHDC4Q8TBB5 520 aa20.35■□□□□ 0.85
CPSF4-201ENST00000292476 FSD2A1L4K1 749 aa20.34■□□□□ 0.85
CPSF4-201ENST00000292476 ANKRD18BA2A2Z9 1011 aa20.34■□□□□ 0.85
CPSF4-201ENST00000292476 TRAK2O60296 914 aa20.34■□□□□ 0.85
CPSF4-201ENST00000292476 TTLL11Q8NHH1 800 aa20.34■□□□□ 0.85
CPSF4-201ENST00000292476 NYXQ9GZU5 481 aa20.34■□□□□ 0.85
CPSF4-201ENST00000292476 HSP90AA1P07900 732 aaKnown RBP20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms