RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 CCDC117Q8IWD4 279 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 MRVI1Q9Y6F6 885 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 INTS8Q75QN2 995 aaKnown RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 NKIRAS1Q9NYS0 192 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 LMNTD2Q8IXW0 634 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 RPAP2Q8IXW5 612 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 RPGRQ92834 1020 aaKnown RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 SEC62Q99442 399 aaKnown RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 TSGA10Q9BZW7 698 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 CACYBPQ9HB71 228 aaKnown RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 IFIT5Q13325 482 aaKnown RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 HLA-DOAP06340 250 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 CAPN2P17655 700 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 UBE2HP62256 183 aa9.92□□□□□ -0.82
NIPBL-201ENST00000282516 GBP7Q8N8V2 638 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-201ENST00000282516 BIN1O00499 593 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 RFC1P35251 1148 aaPredicted RBP9.91□□□□□ -0.82
NIPBL-201ENST00000282516 ZNF165P49910 485 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 HMG20BQ9P0W2 317 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 IFIT3O14879 490 aaKnown RBP9.91□□□□□ -0.82
NIPBL-201ENST00000282516 MCM6Q14566 821 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 SH2D4BQ5SQS7 431 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 NCAPGQ9BPX3 1015 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 B4GALNT4Q76KP1 1039 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 ARFGAP2Q8N6H7 521 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 RAB3IPQ96QF0 476 aaPredicted RBP9.91□□□□□ -0.82
NIPBL-201ENST00000282516 TUBBP07437 444 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 STAT6P42226 847 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 DHX29Q7Z478 1369 aaKnown RBP9.91□□□□□ -0.82
NIPBL-201ENST00000282516 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.91□□□□□ -0.82
NIPBL-201ENST00000282516 PRDM11Q9NQV5 511 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 HFM1A2PYH4 1435 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 FAM76AQ8TAV0 307 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 DDX54Q8TDD1 881 aaKnown RBP9.91□□□□□ -0.82
NIPBL-201ENST00000282516 RAD54L2Q9Y4B4 1467 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 ERBINQ96RT1 1412 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 NUTM1Q86Y26 1132 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 ZSWIM4Q9H7M6 989 aa9.91□□□□□ -0.82
NIPBL-201ENST00000282516 ZNF853P0CG23 659 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 CLUL1Q15846 466 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 SEPT14Q6ZU15 432 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 TRAF1Q13077 416 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 PAXIP1Q6ZW49 1069 aaPredicted RBP9.9□□□□□ -0.82
NIPBL-201ENST00000282516 MICALL1Q8N3F8 863 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 ATAD2Q6PL18 1390 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 VAV2P52735 878 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 NBPF11Q86T75 865 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 GPR161Q8N6U8 529 aaKnown RBP9.9□□□□□ -0.82
NIPBL-201ENST00000282516 VCX3AQ9NNX9 186 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 NKTRP30414 1462 aaKnown RBP9.9□□□□□ -0.82
NIPBL-201ENST00000282516 B4DLN1 442 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 KRT86O43790 486 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 BAG3O95817 575 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 MRPL12P52815 198 aaKnown RBP9.9□□□□□ -0.82
NIPBL-201ENST00000282516 TRPC3Q13507 836 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 CEP85LQ5SZL2 805 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 INF2Q27J81 1249 aa9.9□□□□□ -0.82
NIPBL-201ENST00000282516 FCHSD2O94868 740 aa9.9□□□□□ -0.83
NIPBL-201ENST00000282516 NCBP1Q09161 790 aaKnown RBP9.9□□□□□ -0.83
NIPBL-201ENST00000282516 BICDL1Q6ZP65 573 aa9.9□□□□□ -0.83
NIPBL-201ENST00000282516 PROSER2Q86WR7 435 aaPredicted RBP9.9□□□□□ -0.83
NIPBL-201ENST00000282516 GABPB2Q8TAK5 448 aaPredicted RBP9.9□□□□□ -0.83
NIPBL-201ENST00000282516 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.9□□□□□ -0.83
NIPBL-201ENST00000282516 SYKP43405 635 aa9.9□□□□□ -0.83
NIPBL-201ENST00000282516 KRT83P78385 493 aa9.9□□□□□ -0.83
NIPBL-201ENST00000282516 KAT14Q9H8E8 782 aa9.9□□□□□ -0.83
NIPBL-201ENST00000282516 FAM135AQ9P2D6 1515 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 ABCC11Q96J66 1382 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 PPFIA2O75334 1257 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 JPH4Q96JJ6 628 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 MAK16Q9BXY0 300 aaKnown RBP9.89□□□□□ -0.83
NIPBL-201ENST00000282516 ATP6V0A2Q9Y487 856 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 ZNF213O14771 459 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 PPP1R7Q15435 360 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC62Q6P9F0 684 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 IL1RAPL2Q9NP60 686 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 TNNC1P63316 161 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 FAM169AQ9Y6X4 670 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 EHBP1L1Q8N3D4 1523 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 CETN3O15182 167 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 TMEM67Q5HYA8 995 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 RTEL1-TNFRSF6BF6WH68 1400 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 VIMP08670 466 aaKnown RBP9.89□□□□□ -0.83
NIPBL-201ENST00000282516 MFSD6Q6ZSS7 791 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 PHLDB2Q86SQ0 1253 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 HAUS7Q99871 368 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 RNF216Q9NWF9 866 aaPredicted RBP9.89□□□□□ -0.83
NIPBL-201ENST00000282516 METAP2P50579 478 aaKnown RBP eCLIP9.89□□□□□ -0.83
NIPBL-201ENST00000282516 ZNF692Q9BU19 519 aaPredicted RBP9.89□□□□□ -0.83
NIPBL-201ENST00000282516 CSRNP2Q9H175 543 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 TACC3Q9Y6A5 838 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 HSPA1LP34931 641 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 GSTO1P78417 241 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 NEDD9Q14511 834 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 RILPL1Q5EBL4 403 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 ZMYND15Q9H091 742 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 ZSCAN16Q9H4T2 348 aaPredicted RBP9.89□□□□□ -0.83
NIPBL-201ENST00000282516 GNAT3A8MTJ3 354 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 UBASH3AP57075 661 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 RRAGBQ5VZM2 374 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms