RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ANKRD13DQ6ZTN6 518 aa16.56■□□□□ 0.24
CD44-203ENST00000278386 SP8Q8IXZ3 490 aa16.56■□□□□ 0.24
CD44-203ENST00000278386 HYPKQ9NX55 129 aa16.56■□□□□ 0.24
CD44-203ENST00000278386 APAF1O14727 1248 aa16.55■□□□□ 0.24
CD44-203ENST00000278386 CALD1Q05682 793 aaKnown RBP16.55■□□□□ 0.24
CD44-203ENST00000278386 GOLGA2Q08379 1002 aa16.55■□□□□ 0.24
CD44-203ENST00000278386 FAM89AQ96GI7 184 aa16.55■□□□□ 0.24
CD44-203ENST00000278386 RTFDC1Q9BY42 306 aaPredicted RBP16.55■□□□□ 0.24
CD44-203ENST00000278386 VPS33BQ9H267 617 aa16.55■□□□□ 0.24
CD44-203ENST00000278386 COL4A1P02462 1669 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 CAPN15O75808 1086 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 RTL5Q5HYW3 569 aaPredicted RBP16.54■□□□□ 0.24
CD44-203ENST00000278386 TMC4Q7Z404 712 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 ISCA1Q9BUE6 129 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 IFT57Q9NWB7 429 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 ZNRF3Q9ULT6 936 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 ABT1Q9ULW3 272 aaKnown RBP16.54■□□□□ 0.24
CD44-203ENST00000278386 SPEF2Q9C093 1822 aa16.54■□□□□ 0.24
CD44-203ENST00000278386 MYH3P11055 1940 aa16.53■□□□□ 0.24
CD44-203ENST00000278386 VEGFBP49765 207 aa16.53■□□□□ 0.24
CD44-203ENST00000278386 GNAI1P63096 354 aa16.53■□□□□ 0.24
CD44-203ENST00000278386 KIAA2012Q0VF49 1180 aa16.53■□□□□ 0.24
CD44-203ENST00000278386 USP50Q70EL3 339 aaPredicted RBP16.53■□□□□ 0.24
CD44-203ENST00000278386 ELL2O00472 640 aaPredicted RBP16.52■□□□□ 0.24
CD44-203ENST00000278386 CXCL9Q07325 125 aa16.52■□□□□ 0.24
CD44-203ENST00000278386 CIAPIN1Q6FI81 312 aa16.52■□□□□ 0.24
CD44-203ENST00000278386 RIC3Q7Z5B4 369 aa16.52■□□□□ 0.24
CD44-203ENST00000278386 AIDAQ96BJ3 306 aa16.52■□□□□ 0.24
CD44-203ENST00000278386 BCL2L13Q9BXK5 485 aa16.52■□□□□ 0.24
CD44-203ENST00000278386 ADARB2Q9NS39 739 aaKnown RBP16.52■□□□□ 0.24
CD44-203ENST00000278386 GPRC5DQ9NZD1 345 aa16.52■□□□□ 0.24
CD44-203ENST00000278386 THSD7BQ9C0I4 1608 aa16.52■□□□□ 0.23
CD44-203ENST00000278386 RAD17O75943 681 aa16.51■□□□□ 0.23
CD44-203ENST00000278386 ZNF853P0CG23 659 aa16.51■□□□□ 0.23
CD44-203ENST00000278386 GMPSP49915 693 aaPredicted RBP16.51■□□□□ 0.23
CD44-203ENST00000278386 PAXIP1Q6ZW49 1069 aaPredicted RBP16.51■□□□□ 0.23
CD44-203ENST00000278386 CELF1Q92879 486 aaKnown RBP16.51■□□□□ 0.23
CD44-203ENST00000278386 CDHR2Q9BYE9 1310 aa16.5■□□□□ 0.23
CD44-203ENST00000278386 RASSF10A6NK89 507 aa16.5■□□□□ 0.23
CD44-203ENST00000278386 IRS4O14654 1257 aaPredicted RBP16.5■□□□□ 0.23
CD44-203ENST00000278386 FOXN1O15353 648 aa16.5■□□□□ 0.23
CD44-203ENST00000278386 TNIP1Q15025 636 aa16.5■□□□□ 0.23
CD44-203ENST00000278386 DEFB115Q30KQ5 88 aa16.5■□□□□ 0.23
CD44-203ENST00000278386 PHAXQ9H814 394 aaKnown RBP16.5■□□□□ 0.23
CD44-203ENST00000278386 FMR1Q06787 632 aaKnown RBP eCLIP16.49■□□□□ 0.23
CD44-203ENST00000278386 MYD88Q99836 296 aa16.49■□□□□ 0.23
CD44-203ENST00000278386 NSFL1CQ9UNZ2 370 aaKnown RBP16.49■□□□□ 0.23
CD44-203ENST00000278386 C6orf229H3BNL8 230 aa16.48■□□□□ 0.23
CD44-203ENST00000278386 TRAF5O00463 557 aa16.48■□□□□ 0.23
CD44-203ENST00000278386 GRM1Q13255 1194 aa16.48■□□□□ 0.23
CD44-203ENST00000278386 SF3B3Q15393 1217 aaKnown RBP16.48■□□□□ 0.23
CD44-203ENST00000278386 YDJCA8MPS7 323 aa16.47■□□□□ 0.23
CD44-203ENST00000278386 RIMBP2O15034 1052 aa16.47■□□□□ 0.23
CD44-203ENST00000278386 TRIM28Q13263 835 aaKnown RBP16.47■□□□□ 0.23
CD44-203ENST00000278386 WASHC4Q2M389 1173 aa16.47■□□□□ 0.23
CD44-203ENST00000278386 ZBTB38Q8NAP3 1195 aaPredicted RBP16.47■□□□□ 0.23
CD44-203ENST00000278386 DBNDD1Q9H9R9 158 aa16.47■□□□□ 0.23
CD44-203ENST00000278386 SCN9AQ15858 1988 aa16.47■□□□□ 0.23
CD44-203ENST00000278386 PSME4Q14997 1843 aa16.47■□□□□ 0.23
CD44-203ENST00000278386 WDR33Q9C0J8 1336 aaKnown RBP16.46■□□□□ 0.23
CD44-203ENST00000278386 DDX58O95786 925 aaKnown RBP16.46■□□□□ 0.23
CD44-203ENST00000278386 HSP90B1P14625 803 aaKnown RBP16.46■□□□□ 0.23
CD44-203ENST00000278386 CTCFP49711 727 aaPredicted RBP16.46■□□□□ 0.23
CD44-203ENST00000278386 GPSM2P81274 684 aa16.46■□□□□ 0.23
CD44-203ENST00000278386 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.23
CD44-203ENST00000278386 C8orf58Q8NAV2 365 aa16.46■□□□□ 0.23
CD44-203ENST00000278386 EYA3Q99504 573 aa16.46■□□□□ 0.23
CD44-203ENST00000278386 POLR2AP24928 1970 aaKnown RBP16.46■□□□□ 0.22
CD44-203ENST00000278386 MICALL2Q8IY33 904 aa16.45■□□□□ 0.22
CD44-203ENST00000278386 TRPM4Q8TD43 1214 aa16.45■□□□□ 0.22
CD44-203ENST00000278386 GPR101Q96P66 508 aaPredicted RBP16.45■□□□□ 0.22
CD44-203ENST00000278386 CHMP4AQ9BY43 222 aa16.45■□□□□ 0.22
CD44-203ENST00000278386 CWC25Q9NXE8 425 aaPredicted RBP16.45■□□□□ 0.22
CD44-203ENST00000278386 CACNA1FO60840 1977 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 PSMD14O00487 310 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 ECE2O60344 883 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 CELF2O95319 508 aaKnown RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 ECE1P42892 770 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 RPS8P62241 208 aaKnown RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 CCDC152Q4G0S7 254 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 CCDC191Q8NCU4 936 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 TSR2Q969E8 191 aaKnown RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 CAPNS2Q96L46 248 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 CCDC85AQ96PX6 553 aaPredicted RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 GLIS2Q9BZE0 524 aaPredicted RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 ZNF408Q9H9D4 720 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 SEC31BQ9NQW1 1179 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 WBP1LQ9NX94 342 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 POLLQ9UGP5 575 aa16.44■□□□□ 0.22
CD44-203ENST00000278386 CNOT7Q9UIV1 285 aaKnown RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 ZBTB12Q9Y330 459 aaPredicted RBP16.44■□□□□ 0.22
CD44-203ENST00000278386 SHTN1A0MZ66 631 aa16.43■□□□□ 0.22
CD44-203ENST00000278386 H7C1D1 291 aa16.43■□□□□ 0.22
CD44-203ENST00000278386 UFL1O94874 794 aa16.43■□□□□ 0.22
CD44-203ENST00000278386 PCCAP05165 728 aaPredicted RBP16.43■□□□□ 0.22
CD44-203ENST00000278386 MAP2K1Q02750 393 aaPredicted RBP16.43■□□□□ 0.22
CD44-203ENST00000278386 CYP4F22Q6NT55 531 aa16.43■□□□□ 0.22
CD44-203ENST00000278386 JARID2Q92833 1246 aaPredicted RBP16.43■□□□□ 0.22
CD44-203ENST00000278386 METTL22Q9BUU2 404 aaPredicted RBP16.43■□□□□ 0.22
CD44-203ENST00000278386 STK31Q9BXU1 1019 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms