RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 TRMT1Q9NXH9 659 aaKnown RBP9.11□□□□□ -0.95
LIMD1-201ENST00000273317 ZSCAN22P10073 491 aaPredicted RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 TMEM67Q5HYA8 995 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 RBM27Q9P2N5 1060 aaKnown RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 KDM5AP29375 1690 aaKnown RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 AFAP1Q8N556 730 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 RPRD2Q5VT52 1461 aaKnown RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 ATP2A1O14983 1001 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 SMARCA5O60264 1052 aaPredicted RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 BAG3O95817 575 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 ZFYP08048 801 aaPredicted RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 NOP2P46087 812 aaKnown RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 UBA7P41226 1012 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 TRIM47Q96LD4 638 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 NUP160Q12769 1436 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 N4BP3O15049 544 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 TACC1O75410 805 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 SYCP3Q8IZU3 236 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 IARSP41252 1262 aaKnown RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 DAAM2Q86T65 1068 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 ARHGAP45Q92619 1136 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 ABCF2Q9UG63 623 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 ANAPC4Q9UJX5 808 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 SSX2IPQ9Y2D8 614 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 NUCB1Q02818 461 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 DDX54Q8TDD1 881 aaKnown RBP9.1□□□□□ -0.95
LIMD1-201ENST00000273317 BOLA2Q9H3K6 86 aa9.1□□□□□ -0.95
LIMD1-201ENST00000273317 AKR1B10O60218 316 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 ANKRD24Q8TF21 1146 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 TEX13AQ9BXU3 409 aaPredicted RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 MYO10Q9HD67 2058 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 COMMD10Q9Y6G5 202 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 TMCO5BA8MYB1 307 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 NUDT16Q96DE0 195 aaKnown RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 ADGRL1O94910 1474 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 DDX23Q9BUQ8 820 aaKnown RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 BICDL2A1A5D9 508 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 TRIM27P14373 513 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 KRT83P78385 493 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 PRPF4BQ13523 1007 aaKnown RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 CCDC174Q6PII3 467 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 USP16Q9Y5T5 823 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 DDX46Q7L014 1031 aaKnown RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 TMTC2Q8N394 836 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 FBF1Q8TES7 1133 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 MRPS27Q92552 414 aaKnown RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 GTF2A1P52655 376 aaPredicted RBP9.09□□□□□ -0.95
LIMD1-201ENST00000273317 KAT14Q9H8E8 782 aa9.09□□□□□ -0.95
LIMD1-201ENST00000273317 LDHCP07864 332 aa9.09□□□□□ -0.96
LIMD1-201ENST00000273317 RPGRQ92834 1020 aaKnown RBP9.09□□□□□ -0.96
LIMD1-201ENST00000273317 MYD88Q99836 296 aa9.09□□□□□ -0.96
LIMD1-201ENST00000273317 CCDC94Q9BW85 323 aaPredicted RBP9.09□□□□□ -0.96
LIMD1-201ENST00000273317 UBASH3AP57075 661 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 TMCO4Q5TGY1 634 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 SNX21Q969T3 373 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 SMC6Q96SB8 1091 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 CDC5LQ99459 802 aaKnown RBP9.08□□□□□ -0.96
LIMD1-201ENST00000273317 ORC3Q9UBD5 711 aaPredicted RBP9.08□□□□□ -0.96
LIMD1-201ENST00000273317 HLA-DOAP06340 250 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 ALDH3A1P30838 453 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 STAT6P42226 847 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 PAXIP1Q6ZW49 1069 aaPredicted RBP9.08□□□□□ -0.96
LIMD1-201ENST00000273317 MCM10Q7L590 875 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 SKILP12757 684 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 TUBB2AQ13885 445 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 TUBB2BQ9BVA1 445 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 CLCN1P35523 988 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 DNA2P51530 1060 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 CCDC6Q16204 474 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 SPDYE4A6NLX3 237 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 CLGNO14967 610 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 LIG1P18858 919 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 CWC25Q9NXE8 425 aaPredicted RBP9.08□□□□□ -0.96
LIMD1-201ENST00000273317 DUOX2Q9NRD8 1548 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 NOL3O60936 208 aaKnown RBP9.08□□□□□ -0.96
LIMD1-201ENST00000273317 ZGPATQ8N5A5 531 aaKnown RBP9.08□□□□□ -0.96
LIMD1-201ENST00000273317 SYNCQ9H7C4 482 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 ATP2C2O75185 946 aa9.08□□□□□ -0.96
LIMD1-201ENST00000273317 GNAQP50148 359 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 VAV2P52735 878 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 ATL3Q6DD88 541 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 KIAA1524Q8TCG1 905 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 CRNKL1Q9BZJ0 848 aaKnown RBP9.07□□□□□ -0.96
LIMD1-201ENST00000273317 KRT13P13646 458 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 ATP2A2P16615 1042 aaKnown RBP9.07□□□□□ -0.96
LIMD1-201ENST00000273317 RTL1A6NKG5 1358 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 A6NNZ2 444 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 PRC1O43663 620 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 NBPF7P0C2Y1 421 aaPredicted RBP9.07□□□□□ -0.96
LIMD1-201ENST00000273317 SEPT6Q14141 434 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 TUBB8Q3ZCM7 444 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 KRT86O43790 486 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 FLIIQ13045 1269 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 TCERG1LQ5VWI1 586 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 MSANTD4Q8NCY6 345 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 WDR66Q8TBY9 1149 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 PSMD1Q99460 953 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 ARHGEF12Q9NZN5 1544 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 ATP5DP30049 168 aa9.07□□□□□ -0.96
LIMD1-201ENST00000273317 ABCC5O15440 1437 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms