RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 LINS1Q8NG48 757 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 CRACR2AQ9BSW2 395 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 MAGEC2Q9UBF1 373 aaPredicted RBP13.4□□□□□ -0.26
VPS33A-201ENST00000267199 ERBB4Q15303 1308 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 CDR1P51861 262 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 HOXC9P31274 260 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 TERF1P54274 439 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 NMIQ13287 307 aaPredicted RBP13.4□□□□□ -0.26
VPS33A-201ENST00000267199 AKAP4Q5JQC9 854 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 IFNL2Q8IZJ0 200 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 AIDAQ96BJ3 306 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 BCL2L12Q9HB09 334 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 AKAP2Q9Y2D5 859 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 PLXNC1O60486 1568 aa13.4□□□□□ -0.26
VPS33A-201ENST00000267199 MCM6Q14566 821 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 CCDC181Q5TID7 509 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 OGFRQ9NZT2 677 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 KIF5CO60282 957 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 TRPM1Q7Z4N2 1603 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 TTC41PQ6P2S7 1318 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 VGLL3A8MV65 326 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 CHRNA2Q15822 529 aa13.39□□□□□ -0.27
VPS33A-201ENST00000267199 ZNF397Q8NF99 534 aaPredicted RBP13.39□□□□□ -0.27
VPS33A-201ENST00000267199 GOLGA8BA8MQT2 603 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 RAI14Q9P0K7 980 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 MYOM2P54296 1465 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 USP19O94966 1318 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 SNRPA1P09661 255 aaKnown RBP13.38□□□□□ -0.27
VPS33A-201ENST00000267199 LMOD1P29536 600 aaPredicted RBP13.38□□□□□ -0.27
VPS33A-201ENST00000267199 IFIT5Q13325 482 aaKnown RBP13.38□□□□□ -0.27
VPS33A-201ENST00000267199 GPATCH11Q8N954 259 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 FEZ1Q99689 392 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 ZNF213O14771 459 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 ZNF500O60304 480 aaPredicted RBP13.38□□□□□ -0.27
VPS33A-201ENST00000267199 LIG1P18858 919 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 IPO4Q8TEX9 1081 aaKnown RBP13.38□□□□□ -0.27
VPS33A-201ENST00000267199 CCDC12Q8WUD4 166 aaPredicted RBP13.38□□□□□ -0.27
VPS33A-201ENST00000267199 UBAC1Q9BSL1 405 aa13.38□□□□□ -0.27
VPS33A-201ENST00000267199 SYT10Q6XYQ8 523 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 GPT2Q8TD30 523 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 CREB3L3Q68CJ9 461 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 LRP2BPQ9P2M1 347 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 RTL1A6NKG5 1358 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 LRRIQ1Q96JM4 1722 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 LMBR1LQ6UX01 489 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 CNNM3Q8NE01 707 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 ABCF2Q9UG63 623 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 USP16Q9Y5T5 823 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 KAT6BQ8WYB5 2073 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 KIF20AO95235 890 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 NBPF7P0C2Y1 421 aaPredicted RBP13.37□□□□□ -0.27
VPS33A-201ENST00000267199 KCNA6P17658 529 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 KIAA1328Q86T90 577 aa13.37□□□□□ -0.27
VPS33A-201ENST00000267199 ORC3Q9UBD5 711 aaPredicted RBP13.37□□□□□ -0.27
VPS33A-201ENST00000267199 STARD3NLO95772 234 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 CAVIN2O95810 425 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 TXLNAP40222 546 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 GBP3Q9H0R5 595 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 GNL3LQ9NVN8 582 aaKnown RBP13.36□□□□□ -0.27
VPS33A-201ENST00000267199 NPHP3Q7Z494 1330 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 GPTP24298 496 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 EPS15P42566 896 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 ARFGAP3Q9NP61 516 aa13.36□□□□□ -0.27
VPS33A-201ENST00000267199 CWC25Q9NXE8 425 aaPredicted RBP13.36□□□□□ -0.27
VPS33A-201ENST00000267199 Q6ZUG5 572 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 SGSM2O43147 1006 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 NAPBQ9H115 298 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 ZSCAN16Q9H4T2 348 aaPredicted RBP13.35□□□□□ -0.27
VPS33A-201ENST00000267199 DNA2P51530 1060 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 EIF5P55010 431 aaKnown RBP13.35□□□□□ -0.27
VPS33A-201ENST00000267199 UBASH3AP57075 661 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 CCDC150Q8NCX0 1101 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 PLCD4Q9BRC7 762 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 LGR6Q9HBX8 967 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 TMOD3Q9NYL9 352 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 SBNO1A3KN83 1393 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 SNX14Q9Y5W7 946 aa13.35□□□□□ -0.27
VPS33A-201ENST00000267199 CCDC191Q8NCU4 936 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 SMARCC1Q92922 1105 aaPredicted RBP13.34□□□□□ -0.27
VPS33A-201ENST00000267199 KIAA0232Q92628 1395 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 GOLGA6L10A6NI86 522 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 PHACTR2O75167 634 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 USP8P40818 1118 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 CCDC144CPQ8IYA2 1237 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 C10orf67Q8IYJ2 551 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 NFATC2IPQ8NCF5 419 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 ELF2Q15723 593 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 MCMDC2Q4G0Z9 681 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 ODF2Q5BJF6 829 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 LDHAL6AQ6ZMR3 332 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 SIRT2Q8IXJ6 389 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 RUFY3Q7L099 469 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 RSPH14Q9UHP6 348 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 PALD1Q9ULE6 856 aa13.34□□□□□ -0.27
VPS33A-201ENST00000267199 MINDY4BA8MYZ0 360 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 CCDC148Q8NFR7 591 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 BICC1Q9H694 974 aaKnown RBP13.33□□□□□ -0.28
VPS33A-201ENST00000267199 ADCY10Q96PN6 1610 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 IQGAP3Q86VI3 1631 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 MICU3Q86XE3 530 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms