RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TDO2P48775 406 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 TIMM10P62072 90 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 IMMTQ16891 758 aaKnown RBP13.82□□□□□ -0.2
VPS4A-201ENST00000254950 NWD1Q149M9 1564 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 A0A1B0GUL7 405 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 COPRSQ9NQ92 184 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 PIK3C2AO00443 1686 aa13.82□□□□□ -0.2
VPS4A-201ENST00000254950 TRIM37O94972 964 aa13.81□□□□□ -0.2
VPS4A-201ENST00000254950 CTSWP56202 376 aa13.81□□□□□ -0.2
VPS4A-201ENST00000254950 DBNDD2Q9BQY9 259 aa13.81□□□□□ -0.2
VPS4A-201ENST00000254950 IGKV5-2P06315 115 aa13.81□□□□□ -0.2
VPS4A-201ENST00000254950 RRP12Q5JTH9 1297 aaKnown RBP13.81□□□□□ -0.2
VPS4A-201ENST00000254950 MARCH10Q8NA82 808 aaPredicted RBP13.81□□□□□ -0.2
VPS4A-201ENST00000254950 PDRG1Q9NUG6 133 aa13.81□□□□□ -0.2
VPS4A-201ENST00000254950 VPS37CA5D8V6 355 aaPredicted RBP13.81□□□□□ -0.2
VPS4A-201ENST00000254950 SHPRHQ149N8 1683 aa13.81□□□□□ -0.2
VPS4A-201ENST00000254950 SYAP1Q96A49 352 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-201ENST00000254950 PAG1Q9NWQ8 432 aa13.8□□□□□ -0.2
VPS4A-201ENST00000254950 PARP3Q9Y6F1 533 aa13.8□□□□□ -0.2
VPS4A-201ENST00000254950 CYP19A1P11511 503 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-201ENST00000254950 CASTP20810 708 aaKnown RBP13.8□□□□□ -0.2
VPS4A-201ENST00000254950 CHMLP26374 656 aa13.8□□□□□ -0.2
VPS4A-201ENST00000254950 STK32BQ9NY57 414 aa13.8□□□□□ -0.2
VPS4A-201ENST00000254950 KCNQ4P56696 695 aa13.8□□□□□ -0.2
VPS4A-201ENST00000254950 NBPF26B4DH59 902 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 FOXD4L6Q3SYB3 417 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 NBPF14Q5TI25 921 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 MCTP1Q6DN14 999 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 NBPF10Q6P3W6 841 aaKnown RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 FOXD4L3Q6VB84 417 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 NLRP10Q86W26 655 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 DZIP1Q86YF9 867 aaKnown RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 NBPF15Q8N660 670 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 ZNF622Q969S3 477 aaKnown RBP eCLIP13.79□□□□□ -0.23e-6■■■□□ 14.7
VPS4A-201ENST00000254950 PXDNQ92626 1479 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 KCNQ2O43526 872 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 TRIM29Q14134 588 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 GZF1Q9H116 711 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 CWC22Q9HCG8 908 aaKnown RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 FBXO3Q9UK99 471 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 ADCY9O60503 1353 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 ZSCAN31Q96LW9 406 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 ANKRD2Q9GZV1 360 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 RGPD8O14715 1765 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 RBM6P78332 1123 aaKnown RBP13.79□□□□□ -0.2
VPS4A-201ENST00000254950 USPL1Q5W0Q7 1092 aa13.79□□□□□ -0.2
VPS4A-201ENST00000254950 PDCP20941 246 aa13.78□□□□□ -0.2
VPS4A-201ENST00000254950 NAPBQ9H115 298 aa13.78□□□□□ -0.2
VPS4A-201ENST00000254950 SLIT3O75094 1523 aa13.78□□□□□ -0.2
VPS4A-201ENST00000254950 PLEKHG2Q9H7P9 1386 aa13.78□□□□□ -0.2
VPS4A-201ENST00000254950 PUM3Q15397 648 aaKnown RBP13.78□□□□□ -0.2
VPS4A-201ENST00000254950 NFAT5O94916 1531 aa13.78□□□□□ -0.2
VPS4A-201ENST00000254950 DHX16O60231 1041 aaKnown RBP13.78□□□□□ -0.2
VPS4A-201ENST00000254950 SEC24BO95487 1268 aa13.78□□□□□ -0.2
VPS4A-201ENST00000254950 H7C1W4 665 aa13.77□□□□□ -0.2
VPS4A-201ENST00000254950 SF3A1Q15459 793 aaKnown RBP13.77□□□□□ -0.2
VPS4A-201ENST00000254950 EAF2Q96CJ1 260 aaPredicted RBP13.77□□□□□ -0.2
VPS4A-201ENST00000254950 TBC1D2Q9BYX2 928 aa13.77□□□□□ -0.2
VPS4A-201ENST00000254950 POLA2Q14181 598 aa13.77□□□□□ -0.21
VPS4A-201ENST00000254950 MCMDC2Q4G0Z9 681 aa13.77□□□□□ -0.21
VPS4A-201ENST00000254950 FLAD1Q8NFF5 587 aa13.77□□□□□ -0.21
VPS4A-201ENST00000254950 IQSEC3Q9UPP2 1182 aaPredicted RBP13.77□□□□□ -0.21
VPS4A-201ENST00000254950 NMIQ13287 307 aaPredicted RBP13.77□□□□□ -0.21
VPS4A-201ENST00000254950 KDM6AO15550 1401 aaPredicted RBP13.76□□□□□ -0.21
VPS4A-201ENST00000254950 BAG6P46379 1132 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 ANAPC15P60006 121 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 MTX1Q13505 466 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 SPTY2D1Q68D10 685 aaPredicted RBP13.76□□□□□ -0.21
VPS4A-201ENST00000254950 XAGE2Q96GT9 111 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 HMG20BQ9P0W2 317 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 DDX49Q9Y6V7 483 aaKnown RBP13.76□□□□□ -0.21
VPS4A-201ENST00000254950 RPS6KA4O75676 772 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 CIZ1Q9ULV3 898 aaPredicted RBP13.76□□□□□ -0.21
VPS4A-201ENST00000254950 NSFL1CQ9UNZ2 370 aaKnown RBP13.76□□□□□ -0.21
VPS4A-201ENST00000254950 MROH5Q6ZUA9 1318 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 RAD50Q92878 1312 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 SKOR2Q2VWA4 1001 aaPredicted RBP13.76□□□□□ -0.21
VPS4A-201ENST00000254950 IL27Q8NEV9 243 aa13.76□□□□□ -0.21
VPS4A-201ENST00000254950 LDHCP07864 332 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 HMGB1P09429 215 aaKnown RBP13.75□□□□□ -0.21
VPS4A-201ENST00000254950 SLC9C2Q5TAH2 1124 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 CCDC24Q8N4L8 307 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 LPIN2Q92539 896 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 ZNF219Q9P2Y4 722 aaPredicted RBP13.75□□□□□ -0.21
VPS4A-201ENST00000254950 TOPAZ1Q8N9V7 1692 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 ZNF213O14771 459 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 HLFQ16534 295 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 CLEC4GQ6UXB4 293 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 ATP5JP18859 108 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 STAP2Q9UGK3 403 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 RBM8AQ9Y5S9 174 aaKnown RBP13.75□□□□□ -0.21
VPS4A-201ENST00000254950 SLF2Q8IX21 1173 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 STK11IPQ8N1F8 1099 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 RBM17Q96I25 401 aaKnown RBP13.75□□□□□ -0.21
VPS4A-201ENST00000254950 GREM2Q9H772 168 aa13.75□□□□□ -0.21
VPS4A-201ENST00000254950 RNF113AO15541 343 aaKnown RBP13.74□□□□□ -0.21
VPS4A-201ENST00000254950 GSPT1P15170 499 aaKnown RBP13.74□□□□□ -0.21
VPS4A-201ENST00000254950 STK3Q13188 491 aa13.74□□□□□ -0.21
VPS4A-201ENST00000254950 TRIM28Q13263 835 aaKnown RBP13.74□□□□□ -0.21
VPS4A-201ENST00000254950 RPS8P62241 208 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms