RNA–Protein interactions for RNA: ENST00000241704.7

COPA-201, Transcript of coatomer protein complex subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPA, Length 4,789 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-201ENST00000241704 TXLNBQ8N3L3 684 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 LRRIQ1Q96JM4 1722 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 MAP3K4Q9Y6R4 1608 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 MPHOSPH10O00566 681 aaKnown RBP12.78□□□□□ -0.36
COPA-201ENST00000241704 TMEM132AQ24JP5 1023 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 NLRP3Q96P20 1036 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 CDCA7Q9BWT1 371 aaPredicted RBP12.78□□□□□ -0.36
COPA-201ENST00000241704 RNF17Q9BXT8 1623 aaKnown RBP12.78□□□□□ -0.36
COPA-201ENST00000241704 MAP3K12Q12852 859 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 KIF2AO00139 706 aaPredicted RBP12.78□□□□□ -0.36
COPA-201ENST00000241704 ZNF790Q6PG37 636 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 LGR6Q9HBX8 967 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 KINO60870 393 aaKnown RBP12.78□□□□□ -0.36
COPA-201ENST00000241704 TMCO3Q6UWJ1 677 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 SLF2Q8IX21 1173 aa12.78□□□□□ -0.36
COPA-201ENST00000241704 STK38Q15208 465 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 KIF18AQ8NI77 898 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 PLEKHF1Q96S99 279 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 SH2B1Q9NRF2 756 aaPredicted RBP12.77□□□□□ -0.36
COPA-201ENST00000241704 WWC3Q9ULE0 1092 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 CDKL5O76039 1030 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 CEP135Q66GS9 1140 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 LMBR1LQ6UX01 489 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 RASSF4Q9H2L5 321 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 DNAJC5Q9H3Z4 198 aa12.77□□□□□ -0.36
COPA-201ENST00000241704 MKNK2Q9HBH9 465 aa12.77□□□□□ -0.37
COPA-201ENST00000241704 GDPD2Q9HCC8 539 aa12.77□□□□□ -0.37
COPA-201ENST00000241704 NIP7Q9Y221 180 aaKnown RBP eCLIP12.77□□□□□ -0.37
COPA-201ENST00000241704 KIAA0232Q92628 1395 aa12.77□□□□□ -0.37
COPA-201ENST00000241704 MINDY4BA8MYZ0 360 aa12.77□□□□□ -0.37
COPA-201ENST00000241704 HMGB1P09429 215 aaKnown RBP12.77□□□□□ -0.37
COPA-201ENST00000241704 PIP4K2AP48426 406 aaPredicted RBP12.77□□□□□ -0.37
COPA-201ENST00000241704 CWF19L2Q2TBE0 894 aaKnown RBP12.77□□□□□ -0.37
COPA-201ENST00000241704 C16orf71Q8IYS4 520 aaPredicted RBP12.77□□□□□ -0.37
COPA-201ENST00000241704 CDK5RAP3Q96JB5 506 aa12.77□□□□□ -0.37
COPA-201ENST00000241704 USP21Q9UK80 565 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 TRPM1Q7Z4N2 1603 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 JMYQ8N9B5 988 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 LIMCH1Q9UPQ0 1083 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 A2ML1A8K2U0 1454 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 GOLIM4O00461 696 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 CCDC152Q4G0S7 254 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 NAT10Q9H0A0 1025 aaKnown RBP12.76□□□□□ -0.37
COPA-201ENST00000241704 PRR36Q9H6K5 1346 aa12.76□□□□□ -0.37
COPA-201ENST00000241704 IPO7O95373 1038 aaKnown RBP12.76□□□□□ -0.37
COPA-201ENST00000241704 FAM98CQ17RN3 349 aaKnown RBP12.76□□□□□ -0.37
COPA-201ENST00000241704 POLR3GO15318 223 aaPredicted RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 ZGPATQ8N5A5 531 aaKnown RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 GPT2Q8TD30 523 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 CEBPZQ03701 1054 aaKnown RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 TPTE2Q6XPS3 522 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 CCDC83Q8IWF9 413 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 CCAR2Q8N163 923 aaKnown RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 DDX17Q92841 729 aaKnown RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 STK32BQ9NY57 414 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 SPHKAPQ2M3C7 1700 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 LDHCP07864 332 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 IL15P40933 162 aaPredicted RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 FAM193AP78312 1265 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 NAPBQ9H115 298 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 PARP3Q9Y6F1 533 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 NPHP4O75161 1426 aaPredicted RBP12.75□□□□□ -0.37
COPA-201ENST00000241704 USP6P35125 1406 aa12.75□□□□□ -0.37
COPA-201ENST00000241704 TXLNAP40222 546 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 WDR78Q5VTH9 848 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 FILIP1Q7Z7B0 1213 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 TTF1Q15361 905 aaPredicted RBP12.74□□□□□ -0.37
COPA-201ENST00000241704 PLEKHM2Q8IWE5 1019 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 TMEM51Q9NW97 253 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 BCORL1Q5H9F3 1711 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 MAP3K11Q16584 847 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 WWC2Q6AWC2 1192 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 UBXN4Q92575 508 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 NUP62CLQ9H1M0 184 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 TNMDQ9H2S6 317 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 SLC52A2Q9HAB3 445 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 CFAP45Q9UL16 551 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 LMTK2Q8IWU2 1503 aa12.74□□□□□ -0.37
COPA-201ENST00000241704 DZIP3Q86Y13 1208 aaKnown RBP12.74□□□□□ -0.37
COPA-201ENST00000241704 PA2G4Q9UQ80 394 aaKnown RBP12.74□□□□□ -0.37
COPA-201ENST00000241704 POLR1AO95602 1720 aaPredicted RBP12.74□□□□□ -0.37
COPA-201ENST00000241704 KRT18P05783 430 aaKnown RBP12.73□□□□□ -0.37
COPA-201ENST00000241704 CALRP27797 417 aaKnown RBP12.73□□□□□ -0.37
COPA-201ENST00000241704 UBE2HP62256 183 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 ANKRD18AQ8IVF6 992 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 ESYT1Q9BSJ8 1104 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 TTC41PQ6P2S7 1318 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 IRX5P78411 483 aaPredicted RBP12.73□□□□□ -0.37
COPA-201ENST00000241704 USP48Q86UV5 1035 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 GPATCH11Q8N954 259 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 SNRKQ9NRH2 765 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 CCDC171Q6TFL3 1326 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 NEMFO60524 1076 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 CLEC17AQ6ZS10 378 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 ZNF213O14771 459 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 GNPATO15228 680 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 HSP90B2PQ58FF3 399 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 CCDC186Q7Z3E2 898 aa12.73□□□□□ -0.37
COPA-201ENST00000241704 CCNL1Q9UK58 526 aaPredicted RBP12.73□□□□□ -0.37
COPA-201ENST00000241704 ME1P48163 572 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms