RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 TFF3Q07654 80 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 MYBPHQ13203 477 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 PIN1Q13526 163 aaPredicted RBP13.19□□□□□ -0.3
PNKP-221ENST00000627317 FAM98BQ52LJ0 330 aaKnown RBP13.19□□□□□ -0.3
PNKP-221ENST00000627317 NSUN5P2Q63ZY6 315 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 TMEM211Q6ICI0 200 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 P4HA3Q7Z4N8 544 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 GDF7Q7Z4P5 450 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 YTHDF3Q7Z739 585 aaKnown RBP13.19□□□□□ -0.3
PNKP-221ENST00000627317 SPATA24Q86W54 205 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 AQP12AQ8IXF9 295 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 STK35Q8TDR2 534 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 OSTF1Q92882 214 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 DNAJA3Q96EY1 480 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 ZNF845Q96IR2 970 aaPredicted RBP13.19□□□□□ -0.3
PNKP-221ENST00000627317 MPP4Q96JB8 637 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 SEPHS2Q99611 448 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 FNDC11Q9BVV2 318 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 PRRG4Q9BZD6 226 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 CLCF1Q9UBD9 225 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 MCTS1Q9ULC4 181 aaKnown RBP13.19□□□□□ -0.3
PNKP-221ENST00000627317 ZNF175Q9Y473 711 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 CSMD2Q7Z408 3487 aa13.19□□□□□ -0.3
PNKP-221ENST00000627317 OTOGQ6ZRI0 2925 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 ZC3H12DA2A288 527 aaKnown RBP13.18□□□□□ -0.3
PNKP-221ENST00000627317 J3KTA2 159 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 HNRNPRO43390 633 aaKnown RBP13.18□□□□□ -0.3
PNKP-221ENST00000627317 PMS2P2O95744 297 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 SEMG1P04279 462 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 FABP3P05413 133 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 GLI4P10075 376 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 THRBP10828 461 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 FCGR2AP12318 317 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 PTNP21246 168 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 IDUAP35475 653 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 DIO1P49895 249 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 OR2B6P58173 313 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 VLDLRP98155 873 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 CHRNB3Q05901 458 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 ST3GAL3Q11203 375 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 FOXD4Q12950 439 aaPredicted RBP13.18□□□□□ -0.3
PNKP-221ENST00000627317 PON3Q15166 354 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 ZSCAN26Q16670 478 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 C1orf146Q5VVC0 180 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 C1orf140Q5VVS0 124 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 C5orf46Q6UWT4 87 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 TMPPEQ6ZT21 453 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 LSRQ86X29 649 aaPredicted RBP13.18□□□□□ -0.3
PNKP-221ENST00000627317 OFCC1Q8IZS5 231 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 CPNE4Q96A23 557 aaPredicted RBP13.18□□□□□ -0.3
PNKP-221ENST00000627317 MARVELD3Q96A59 401 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 SDCCAG3Q96C92 435 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 ZHX1-C8orf76Q96EF9 292 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 ARL5BQ96KC2 179 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 C7orf34Q96L11 122 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 ZNF300Q96RE9 604 aaPredicted RBP13.18□□□□□ -0.3
PNKP-221ENST00000627317 EPYCQ99645 322 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 TTYH2Q9BSA4 534 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 POTEKPQ9BYX7 375 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 MAGIXQ9H6Y5 334 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 CALHM2Q9HA72 323 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 CHST11Q9NPF2 352 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 NDUFAF4Q9P032 175 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 A4GNTQ9UNA3 340 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 RNF6Q9Y252 685 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 MYO9AB2RTY4 2548 aa13.18□□□□□ -0.3
PNKP-221ENST00000627317 PDZD2O15018 2839 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 MPDZO75970 2070 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 DHRS12A0PJE2 317 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 KDM4EB2RXH2 506 aaPredicted RBP13.17□□□□□ -0.3
PNKP-221ENST00000627317 LYPD3O95274 346 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 THY1P04216 161 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 IGFBP2P18065 325 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 RHCEP18577 417 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 CHRNB4P30926 498 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 RAC3P60763 192 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 PMPCAQ10713 525 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 TRAM2Q15035 370 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 ZNF239Q16600 458 aaKnown RBP13.17□□□□□ -0.3
PNKP-221ENST00000627317 TTC33Q6PID6 262 aaPredicted RBP13.17□□□□□ -0.3
PNKP-221ENST00000627317 SEM1Q6ZVN7 128 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 ADGRE4PQ86SQ3 457 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 P3H2Q8IVL5 708 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 ZDHHC21Q8IVQ6 265 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 FNDC9Q8TBE3 224 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 WNT2BQ93097 391 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 RSRC1Q96IZ7 334 aaKnown RBP13.17□□□□□ -0.3
PNKP-221ENST00000627317 UCN2Q96RP3 112 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 TM9SF2Q99805 663 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 TMEM43Q9BTV4 400 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 TAPBPLQ9BX59 468 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 SRXN1Q9BYN0 137 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 IL1RAPQ9NPH3 570 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 RHCGQ9UBD6 479 aa13.17□□□□□ -0.3
PNKP-221ENST00000627317 IGKV1D-42A0A075B6H8 117 aa13.16□□□□□ -0.3
PNKP-221ENST00000627317 TRAV36DV7A0A075B6V5 113 aa13.16□□□□□ -0.3
PNKP-221ENST00000627317 MBD3L4A6NDZ8 208 aaPredicted RBP13.16□□□□□ -0.3
PNKP-221ENST00000627317 MBD3L3A6NE82 208 aaPredicted RBP13.16□□□□□ -0.3
PNKP-221ENST00000627317 MBD3L5A6NJ08 208 aaPredicted RBP13.16□□□□□ -0.3
PNKP-221ENST00000627317 DNPH1O43598 174 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms