RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 C16orf97H3BN30 126 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 KRT34O76011 436 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 LGI1O95970 557 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 CCNA2P20248 432 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 CXCR1P25024 350 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 IDUAP35475 653 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 KCNJ5P48544 419 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 P2RY4P51582 365 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 SLC35A1P78382 337 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 VEZF1Q14119 521 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 DUSP7Q16829 419 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 INTS11Q5TA45 600 aaKnown RBP14.32□□□□□ -0.12
TRIM28-213ENST00000598355 FAM91A1Q658Y4 838 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 STK32CQ86UX6 486 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 TMEM200AQ86VY9 491 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 POU5F2Q8N7G0 328 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 TAMM41Q96BW9 452 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 RCN3Q96D15 328 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 ZNF583Q96ND8 569 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 ARHGDIGQ99819 225 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 ELAC2Q9BQ52 826 aaKnown RBP14.32□□□□□ -0.12
TRIM28-213ENST00000598355 PTDSS2Q9BVG9 487 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 TRIM2Q9C040 744 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 C12orf49Q9H741 205 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 GID8Q9NWU2 228 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 A0A0B4J2E0 115 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 A0A1B0GX12 115 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 FAM220BPB1ANY3 271 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 FTCDNL1E5RQL4 147 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 M0QX08 132 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 SIAH2O43255 324 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 FMO6PO60774 539 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 CNOT4O95628 575 aaKnown RBP14.31□□□□□ -0.12
TRIM28-213ENST00000598355 OPN1SWP03999 348 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 HRGP04196 525 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 COX4I1P13073 169 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 COX5AP20674 150 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 CRYGSP22914 178 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 EDNRAP25101 427 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 RGS8P57771 180 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-213ENST00000598355 BNIP2Q12982 314 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 SLC17A1Q14916 467 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 SWT1Q5T5J6 900 aaKnown RBP14.31□□□□□ -0.12
TRIM28-213ENST00000598355 ERICH5Q6P6B1 374 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 C5orf46Q6UWT4 87 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 C22orf34Q6ZV56 151 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 ARPINQ7Z6K5 226 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 DNAJA4Q8WW22 397 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-213ENST00000598355 DNAJA3Q96EY1 480 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 WFIKKN1Q96NZ8 548 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 NSRP1Q9H0G5 558 aaKnown RBP14.31□□□□□ -0.12
TRIM28-213ENST00000598355 PCDHAC1Q9H158 963 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 KLHL28Q9NXS3 571 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 EMC3Q9P0I2 261 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 NDRG3Q9UGV2 375 aa14.31□□□□□ -0.12
TRIM28-213ENST00000598355 ROS1P08922 2347 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 IGKV1D-42A0A075B6H8 117 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 GMNCA6NCL1 334 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 AQP7P3A6NL99 342 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 DEFB108AA8MXU0 73 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 GPR171O14626 319 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 GPIP06744 558 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 PPP3CBP16298 524 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 FPR1P21462 350 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 NTF4P34130 210 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 OR2B6P58173 313 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 NPTX1Q15818 432 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 C1orf140Q5VVS0 124 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 HACD2Q6Y1H2 254 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 Q6ZT83 130 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 GALNT5Q7Z7M9 940 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 CCDC103Q8IW40 242 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 SMYD1Q8NB12 490 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 OR52E4Q8NGH9 312 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 MFSD8Q8NHS3 518 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 SLC38A4Q969I6 547 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 ECSITQ9BQ95 431 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 CLEC4MQ9H2X3 399 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-213ENST00000598355 PIF1Q9H611 641 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 FANCFQ9NPI8 374 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 USP22Q9UPT9 525 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 GPR52Q9Y2T5 361 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 FLVCR1Q9Y5Y0 555 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 PRRC2AP48634 2157 aaKnown RBP14.3□□□□□ -0.12
TRIM28-213ENST00000598355 CADP27708 2225 aa14.3□□□□□ -0.12
TRIM28-213ENST00000598355 A0A087WUJ7 227 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 A0A1W2PPR1 153 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 M0R3H8 397 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 THBDP07204 575 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 PNMTP11086 282 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 LOXP28300 417 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-213ENST00000598355 PRDX6P30041 224 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 GYS2P54840 703 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 CEACAM7Q14002 265 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 P2RY6Q15077 328 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 EXOC3L2Q2M3D2 409 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 ALG10BQ5I7T1 473 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 ULK3Q6PHR2 472 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 CDH24Q86UP0 819 aa14.29□□□□□ -0.12
TRIM28-213ENST00000598355 RANBP3LQ86VV4 465 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms