RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SLC9A8Q9Y2E8 581 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 A0A1B0GWA3 101 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 ZC3H12DA2A288 527 aaKnown RBP13.39□□□□□ -0.27
UPF1-202ENST00000594243 ZNF724A8MTY0 619 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 TMEM229AB2RXF0 380 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 NME4O00746 187 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 GSTA4O15217 222 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 FPR1P21462 350 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 HTR2AP28223 471 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 CPOXP36551 454 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 KIR2DL3P43628 341 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 MNAT1P51948 309 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 H3F3AP84243 136 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 CEACAM7Q14002 265 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 C1orf140Q5VVS0 124 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 BEND4Q6ZU67 534 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 OR6T1Q8NGN1 323 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 PIGXQ8TBF5 258 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 RNF217Q8TC41 542 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 SLC38A4Q969I6 547 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 DNAJA3Q96EY1 480 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 C14orf79Q96F83 325 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 WFDC6Q9BQY6 131 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 PRR14Q9BWN1 585 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 SPAG4Q9NPE6 437 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 ABCD2Q9UBJ2 740 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 HCFC1P51610 2035 aa13.39□□□□□ -0.27
UPF1-202ENST00000594243 CACNA1DQ01668 2161 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 TUBAL3A6NHL2 446 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 LIPT2A6NK58 231 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 M0R3H8 397 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 OR2T1O43869 369 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 TPST2O60704 377 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 NPIPB7O75200 414 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 POU2F1P14859 743 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 SSTR2P30874 369 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 CD79BP40259 229 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 CRYBA2P53672 197 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 SELENOWP63302 87 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 KRT72Q14CN4 511 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 OR7A5Q15622 319 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 ENTPD8Q5MY95 495 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 SWT1Q5T5J6 900 aaKnown RBP13.38□□□□□ -0.27
UPF1-202ENST00000594243 ZNF613Q6PF04 617 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 ZNF474Q6S9Z5 364 aaPredicted RBP13.38□□□□□ -0.27
UPF1-202ENST00000594243 PAQR6Q6TCH4 344 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 GDF7Q7Z4P5 450 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 FITM2Q8N6M3 262 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 VANGL1Q8TAA9 524 aaPredicted RBP13.38□□□□□ -0.27
UPF1-202ENST00000594243 LZICQ8WZA0 190 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 DOCK7Q96N67 2140 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 C12orf49Q9H741 205 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 NDE1Q9NXR1 346 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 ADA2Q9NZK5 511 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 EMC3Q9P0I2 261 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 NDRG3Q9UGV2 375 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 SH3GLB1Q9Y371 365 aa13.38□□□□□ -0.27
UPF1-202ENST00000594243 IGKV3D-15A0A087WSY6 115 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 A0A087WUJ7 227 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 A0A0B4J2E0 115 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 A0A1B0GX12 115 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 CXCR6O00574 342 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 GPR171O14626 319 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 AHSA1O95433 338 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 GSK3BP49841 420 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 CDH12P55289 794 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 FAM27E3Q08E93 113 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 LRRC23Q53EV4 343 aaPredicted RBP13.37□□□□□ -0.27
UPF1-202ENST00000594243 CYBRD1Q53TN4 286 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 ABLIM2Q6H8Q1 611 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 NUFIP2Q7Z417 695 aaKnown RBP13.37□□□□□ -0.27
UPF1-202ENST00000594243 GALNT5Q7Z7M9 940 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 ZNF295-AS1Q8N0V1 137 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 MFSD8Q8NHS3 518 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 KCTD14Q9BQ13 255 aaPredicted RBP13.37□□□□□ -0.27
UPF1-202ENST00000594243 ARL8BQ9NVJ2 186 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 ADPRHL2Q9NX46 363 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 ING1Q9UK53 422 aaPredicted RBP13.37□□□□□ -0.27
UPF1-202ENST00000594243 CRYBG3Q68DQ2 2970 aa13.37□□□□□ -0.27
UPF1-202ENST00000594243 CPSF4LA6NMK7 179 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 ZNF716A6NP11 495 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 C16orf97H3BN30 126 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 CHP2O43745 196 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 GMNNO75496 209 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 VAMP5O95183 116 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 KLK2P20151 261 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 GTF2E2P29084 291 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 RPS5P46782 204 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 SLC16A1P53985 500 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 MXRA7P84157 204 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 EGR4Q05215 589 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 SNTB1Q13884 538 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 NPTX1Q15818 432 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 EXOC3L2Q2M3D2 409 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 OTUD3Q5T2D3 398 aaPredicted RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 TMEM225Q6GV28 225 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 C16orf89Q6UX73 402 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 CARM1Q86X55 608 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 RBM45Q8IUH3 476 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 CCDC103Q8IW40 242 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms