RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 KLHL24Q6TFL4 600 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 CLEC4FQ8N1N0 589 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 HTRA1Q92743 480 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 RAB8BQ92930 207 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 ZNF317Q96PQ6 595 aaPredicted RBP12.23□□□□□ -0.45
VMP1-209ENST00000588915 TRNT1Q96Q11 434 aaKnown RBP12.23□□□□□ -0.45
VMP1-209ENST00000588915 PIMREGQ9BSJ6 248 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 ROPN1BQ9BZX4 212 aaPredicted RBP12.23□□□□□ -0.45
VMP1-209ENST00000588915 DPY30Q9C005 99 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 ROPN1Q9HAT0 212 aaPredicted RBP12.23□□□□□ -0.45
VMP1-209ENST00000588915 MOV10Q9HCE1 1003 aaKnown RBP12.23□□□□□ -0.45
VMP1-209ENST00000588915 LGALS13Q9UHV8 139 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 OSGIN1Q9UJX0 560 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 TMED7Q9Y3B3 224 aa12.23□□□□□ -0.45
VMP1-209ENST00000588915 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.23□□□□□ -0.45
VMP1-209ENST00000588915 ARFGEF3Q5TH69 2177 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 MALRD1Q5VYJ5 2156 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 SVEP1Q4LDE5 3571 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 LOC390937A0A1W2PQ73 354 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 B9A039 149 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 PDE5AO76074 875 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 SNUPNO95149 360 aaKnown RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 VAMP5O95183 116 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 CPSF4O95639 269 aaKnown RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 HNF1AP20823 631 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 NR4A2P43354 598 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 ANXA11P50995 505 aaKnown RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 SLC25A3Q00325 362 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 GNA13Q14344 377 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 C3orf36Q3SXR2 165 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 GPAT3Q53EU6 434 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 TNFAIP8L2Q6P589 184 aaPredicted RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 LRRC74BQ6ZQY2 392 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 KIRREL3Q8IZU9 778 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 ZIC4Q8N9L1 334 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 CNOT9Q92600 299 aaKnown RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 FBXO17Q96EF6 278 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 ADAM19Q9H013 955 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 AKTIPQ9H8T0 292 aa12.22□□□□□ -0.45
VMP1-209ENST00000588915 MTHFD2LQ9H903 347 aaPredicted RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 MARCOQ9UEW3 520 aaPredicted RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.22□□□□□ -0.45
VMP1-209ENST00000588915 ANK2Q01484 3957 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 TMEM72A0PK05 275 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 PRAMEF27A3QJZ7 478 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 AGAP5A6NIR3 686 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 OR6C65A6NJZ3 312 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 ATP6V1G2-DDX39BF2Z307 99 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 HMGN4O00479 90 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 SPAG7O75391 227 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 GPIP06744 558 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 C8BP07358 591 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 HOXB1P14653 301 aaPredicted RBP12.21□□□□□ -0.45
VMP1-209ENST00000588915 IGFBP5P24593 272 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 TACR3P29371 465 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 SERPINF1P36955 418 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 CLNS1AP54105 237 aaKnown RBP12.21□□□□□ -0.45
VMP1-209ENST00000588915 SNRPD2P62316 118 aaKnown RBP12.21□□□□□ -0.45
VMP1-209ENST00000588915 PLAURQ03405 335 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 SQLEQ14534 574 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 FAM120AOSQ5T036 256 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 C9orf135Q5VTT2 229 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 LIPNQ5VXI9 398 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 NUDCD3Q8IVD9 361 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 ZNF440Q8IYI8 595 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 TRIML2Q8N7C3 387 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 MSI2Q96DH6 328 aaKnown RBP12.21□□□□□ -0.45
VMP1-209ENST00000588915 KATNB1Q9BVA0 655 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 C19orf24Q9BVV8 132 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 PRR14Q9BWN1 585 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 SLC38A1Q9H2H9 487 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 TMEM45AQ9NWC5 275 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 BTNL2Q9UIR0 455 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 MOKQ9UQ07 419 aa12.21□□□□□ -0.45
VMP1-209ENST00000588915 LOC100289279A0A1B0GTE1 492 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 CFAP73A6NFT4 308 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 AQP7P3A6NL99 342 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 CLDN24A6NM45 220 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 CRYAAP02489 173 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 MYZAPP0CAP1 466 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 APEHP13798 732 aaKnown RBP12.2□□□□□ -0.46
VMP1-209ENST00000588915 CCNA2P20248 432 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 CHI3L1P36222 383 aaPredicted RBP12.2□□□□□ -0.46
VMP1-209ENST00000588915 ETV4P43268 484 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 LRRC74AQ0VAA2 488 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 GGTLC2Q14390 218 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 EFNB3Q15768 340 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 OTUD3Q5T2D3 398 aaPredicted RBP12.2□□□□□ -0.46
VMP1-209ENST00000588915 AAED1Q7RTV5 226 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 ANKRD46Q86W74 232 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 ARIH2OSQ8N7S6 290 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 FAM169BQ8N8A8 192 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 OR9K2Q8NGE7 335 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 MAGEE2Q8TD90 523 aaPredicted RBP12.2□□□□□ -0.46
VMP1-209ENST00000588915 DNAJA3Q96EY1 480 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 CCDC115Q96NT0 180 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 SORCS2Q96PQ0 1159 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 SLC38A2Q96QD8 506 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 KCNS3Q9BQ31 491 aa12.2□□□□□ -0.46
VMP1-209ENST00000588915 SLC35A5Q9BS91 424 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms