RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 TACR3P29371 465 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 MPGP29372 298 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 THBS2P35442 1172 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 CHI3L1P36222 383 aaPredicted RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 KHKP50053 298 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 RPL14P50914 215 aaKnown RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 POLR2HP52434 150 aaKnown RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 CLNS1AP54105 237 aaKnown RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 PRPS1P60891 318 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 ABCE1P61221 599 aaKnown RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 TXNL4AP83876 142 aaKnown RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 PDCD2Q16342 344 aaPredicted RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 GSTA3Q16772 222 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 SPANXN4Q5MJ08 99 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 TSPO2Q5TGU0 170 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 CYB5R2Q6BCY4 276 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 PAQR6Q6TCH4 344 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 CASP12Q6UXS9 341 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 LRRC74BQ6ZQY2 392 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 HMGN2P46Q86SG4 172 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 ZIC4Q8N9L1 334 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 C10orf105Q8TEF2 133 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 HTRA1Q92743 480 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 TMEM45BQ96B21 275 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 PPP1R36Q96LQ0 422 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 CCDC115Q96NT0 180 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 KCNK17Q96T54 332 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 SLC35A5Q9BS91 424 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 SF3B5Q9BWJ5 86 aaKnown RBP9.28□□□□□ -0.92
RFFL-209ENST00000581265 C20orf27Q9GZN8 174 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 SLC38A1Q9H2H9 487 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 PIF1Q9H611 641 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 BTNL2Q9UIR0 455 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 HAO1Q9UJM8 370 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 PMF1-BGLAPU3KQ54 211 aa9.28□□□□□ -0.92
RFFL-209ENST00000581265 ARFGEF3Q5TH69 2177 aa9.27□□□□□ -0.92
RFFL-209ENST00000581265 ZC3H12DA2A288 527 aaKnown RBP9.27□□□□□ -0.93
RFFL-209ENST00000581265 WDR91A4D1P6 747 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 CFAP73A6NFT4 308 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 CCDC154A6NI56 674 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 E9PBE3 544 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 AP3D1O14617 1153 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 C1QCP02747 245 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 CSF3P09919 207 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 LBPP18428 481 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 RPS4Y1P22090 263 aaKnown RBP9.27□□□□□ -0.93
RFFL-209ENST00000581265 USF1P22415 310 aaPredicted RBP9.27□□□□□ -0.93
RFFL-209ENST00000581265 S100A3P33764 101 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 HPCAP84074 193 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 SLC25A3Q00325 362 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 GNA13Q14344 377 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 CHI3L2Q15782 390 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 SYPL1Q16563 259 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 SWI5Q1ZZU3 235 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 MST1LQ2TV78 715 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 FAM174BQ3ZCQ3 159 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 C9orf135Q5VTT2 229 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 RNF130Q86XS8 419 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 KIRREL3Q8IZU9 778 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 ANKFN1Q8N957 763 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 POMGNT2Q8NAT1 580 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 AENQ8WTP8 325 aaKnown RBP9.27□□□□□ -0.93
RFFL-209ENST00000581265 PKNOX2Q96KN3 472 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 TEX37Q96LM6 180 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 SORT1Q99523 831 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 MANSC1Q9H8J5 431 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 LPAR3Q9UBY5 353 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 ATP23Q9Y6H3 246 aa9.27□□□□□ -0.93
RFFL-209ENST00000581265 MALRD1Q5VYJ5 2156 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 LIPT2A6NK58 231 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 VWC2LB2RUY7 222 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 WNT11O96014 354 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 GPIP06744 558 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 DBIP07108 87 aaKnown RBP9.26□□□□□ -0.93
RFFL-209ENST00000581265 CHRM4P08173 479 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 IGHV4-31P0DP07 118 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 UQCRBP14927 111 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 IL7RP16871 459 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 PAX7P23759 505 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 SLC1A6P48664 564 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 ANXA11P50995 505 aaKnown RBP9.26□□□□□ -0.93
RFFL-209ENST00000581265 VSNL1P62760 191 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 LSM11P83369 360 aaKnown RBP eCLIP9.26□□□□□ -0.93
RFFL-209ENST00000581265 LRRC74AQ0VAA2 488 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 EPS8Q12929 822 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 OTUD3Q5T2D3 398 aaPredicted RBP9.26□□□□□ -0.93
RFFL-209ENST00000581265 MRPL2Q5T653 305 aaKnown RBP9.26□□□□□ -0.93
RFFL-209ENST00000581265 OGFOD2Q6N063 350 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 AAED1Q7RTV5 226 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 ZNF440Q8IYI8 595 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 TRIML2Q8N7C3 387 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 TMEM99Q8N816 258 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 OR9K2Q8NGE7 335 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 ZNF385AQ96PM9 386 aaKnown RBP9.26□□□□□ -0.93
RFFL-209ENST00000581265 PANX1Q96RD7 426 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 NUF2Q9BZD4 464 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 PLA2G12AQ9BZM1 189 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 MEAF6Q9HAF1 191 aa9.26□□□□□ -0.93
RFFL-209ENST00000581265 SSU72Q9NP77 194 aaKnown RBP9.26□□□□□ -0.93
RFFL-209ENST00000581265 OBP2BQ9NPH6 170 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms