RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZBTB8AQ96BR9 441 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 SLC25A36Q96CQ1 311 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 ABHD17AQ96GS6 310 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 PCDHGA9Q9Y5G4 932 aaKnown RBP22.65■■□□□ 1.22
SHMT1-207ENST00000580002 A0A087WZY1 265 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 FAM47E-STBD1D6RA91 191 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 GLSO94925 669 aaPredicted RBP22.64■■□□□ 1.22
SHMT1-207ENST00000580002 BGLAPP02818 100 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 PLGLB1Q02325 96 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 COX10Q12887 443 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 CLEC12AQ5QGZ9 265 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 USP51Q70EK9 711 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 SAMD8Q96LT4 415 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 ZNF570Q96NI8 536 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 SLC19A3Q9BZV2 496 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 SIGLEC7Q9Y286 467 aa22.64■■□□□ 1.22
SHMT1-207ENST00000580002 DSPP15924 2871 aaKnown RBP22.64■■□□□ 1.21
SHMT1-207ENST00000580002 A0A1W2PNR3 127 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 H0YC42 278 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 KLRC4-KLRK1H3BQV0 150 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 CDK2AP1O14519 115 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 SLC16A6O15403 523 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 DENRO43583 198 aaKnown RBP22.63■■□□□ 1.21
SHMT1-207ENST00000580002 TFPIP10646 304 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 IMPDH2P12268 514 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 SFTPDP35247 375 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 TPD52P55327 224 aaPredicted RBP22.63■■□□□ 1.21
SHMT1-207ENST00000580002 ZNF620Q6ZNG0 422 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 MCCC2Q9HCC0 563 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 NDRG4Q9ULP0 352 aaKnown RBP22.63■■□□□ 1.21
SHMT1-207ENST00000580002 TMEM5Q9Y2B1 443 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 SLC6A5Q9Y345 797 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 TRAV36DV7A0A075B6V5 113 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 BCKDKO14874 412 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 ACADSP16219 412 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 GSTM3P21266 225 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 STARP49675 285 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 WLSQ5T9L3 541 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 ACSM5Q6NUN0 579 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 OAFQ86UD1 273 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 ZADH2Q8N4Q0 377 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 RBMXL3Q8N7X1 1067 aaKnown RBP22.63■■□□□ 1.21
SHMT1-207ENST00000580002 ZFP62Q8NB50 900 aaPredicted RBP22.63■■□□□ 1.21
SHMT1-207ENST00000580002 ZNF555Q8NEP9 628 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 SMPDL3BQ92485 455 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 HHATLQ9HCP6 504 aa22.63■■□□□ 1.21
SHMT1-207ENST00000580002 KRCC1Q9NPI7 259 aaPredicted RBP22.63■■□□□ 1.21
SHMT1-207ENST00000580002 PIEZO2Q9H5I5 2752 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 BSNQ9UPA5 3926 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 H0YAE9 185 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 ITGB2P05107 769 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 EIF1P41567 113 aaKnown RBP22.62■■□□□ 1.21
SHMT1-207ENST00000580002 ESRRGP62508 458 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 PPIAP62937 165 aaKnown RBP22.62■■□□□ 1.21
SHMT1-207ENST00000580002 TMEM176BQ3YBM2 270 aaPredicted RBP22.62■■□□□ 1.21
SHMT1-207ENST00000580002 IGFL3Q6UXB1 125 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 IGFN1Q86VF2 1251 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 TMEM178AQ8NBL3 297 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 MOSPD2Q8NHP6 518 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 STK35Q8TDR2 534 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 ANKRD60Q9BZ19 345 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 OR52D1Q9H346 318 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 GMPPBQ9Y5P6 360 aa22.62■■□□□ 1.21
SHMT1-207ENST00000580002 ZAR1LA6NP61 321 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 CDH2P19022 906 aaPredicted RBP22.61■■□□□ 1.21
SHMT1-207ENST00000580002 ADH6P28332 368 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 GINS1Q14691 196 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 SYT14P1Q58G82 188 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 SLC6A19Q695T7 634 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 OR4Q3Q8NH05 313 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 HRASLS5Q96KN8 279 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 OR2B2Q9GZK3 357 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 SLC6A15Q9H2J7 730 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 IL20Q9NYY1 176 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 PCDHGB6Q9Y5F9 930 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 TRAV17A0A0B4J275 112 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 ZNF208O43345 1280 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 KLK2P20151 261 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 ZBED5Q49AG3 693 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 TTC23Q5W5X9 447 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 FANK1Q8TC84 345 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 TSSK6Q9BXA6 273 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 DEFB127Q9H1M4 99 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 NANSQ9NR45 359 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 LUZP4Q9P127 313 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 TP53TG5Q9Y2B4 290 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 LIPGQ9Y5X9 500 aa22.61■■□□□ 1.21
SHMT1-207ENST00000580002 FTCDNL1E5RQL4 147 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 MKRN2OSH3BPM6 223 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 ASAH2BP0C7U1 165 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 GIPRP48546 466 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 MLLT10P55197 1068 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 DBPQ10586 325 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-207ENST00000580002 MYBPHQ13203 477 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 OR7A5Q15622 319 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 LINC00303Q3SY05 128 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 GLYR1Q49A26 553 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-207ENST00000580002 C3orf33Q6P1S2 294 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 OR5B2Q96R09 309 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 PITX2Q99697 317 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms