RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 DPPA5A6NC42 116 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 NKX2-6A6NCS4 301 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 A6NHS1 94 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 E9PLN8 166 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 NPIPB9F8W1W9 429 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 ZNF264O43296 627 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 CHP2O43745 196 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 CDC40O60508 579 aaKnown RBP eCLIP9.23□□□□□ -0.93
SS18-210ENST00000578700 FAM20BO75063 409 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 ZFAND5O76080 213 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 TPOP07202 933 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 SP1P08047 785 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 LINGO3P0C6S8 592 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 NAGAP17050 411 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 HOXB4P17483 251 aaPredicted RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 FPR3P25089 353 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 RBM34P42696 430 aaKnown RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 SLC6A8P48029 635 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 CCR4P51679 360 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 TEKQ02763 1124 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 TSPAN31Q12999 210 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 CDK5R2Q13319 367 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 MAD2L1BPQ15013 274 aaPredicted RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 PTGES3Q15185 160 aaKnown RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 EXT1Q16394 746 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 KLHL26Q53HC5 615 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 PLAG1Q6DJT9 500 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 SLC25A25Q6KCM7 469 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 ZNF773Q6PK81 442 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 PTCHD4Q6ZW05 846 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 ZAR1Q86SH2 424 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 CADM2Q8N3J6 435 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 LSMEM1Q8N8F7 131 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 MDS2Q8NDY4 140 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 OR4C3Q8NH37 302 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 NUBPLQ8TB37 319 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 SLC22A8Q8TCC7 542 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 PHOSPHO1Q8TCT1 267 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 DNAJA4Q8WW22 397 aaPredicted RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 TMEM239Q8WW34 195 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 TRUB1Q8WWH5 349 aaKnown RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 OSTF1Q92882 214 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 TMCO6Q96DC7 493 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 OMA1Q96E52 524 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 FRMD6Q96NE9 622 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 SLC38A2Q96QD8 506 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 VKORC1Q9BQB6 163 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 PRR14Q9BWN1 585 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 RSPO3Q9BXY4 272 aaPredicted RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 DEFB126Q9BYW3 111 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 EXOSC3Q9NQT5 275 aaKnown RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 RASSF1Q9NS23 344 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 LRFN1Q9P244 771 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 PPIEQ9UNP9 301 aaKnown RBP9.23□□□□□ -0.93
SS18-210ENST00000578700 ABCA4P78363 2273 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 HRNRQ86YZ3 2850 aaPredicted RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 AKAP6Q13023 2319 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 A0A1B0GTH9 108 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 A0A1W2PQD3 144 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 HTR3EA5X5Y0 456 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 SNTNA6NMZ2 147 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ZAR1LA6NP61 321 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 SLC1A7O00341 560 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ADAM10O14672 748 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 NDUFB5O43674 189 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 EIF4E2O60573 245 aaKnown RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 MRPS14O60783 128 aaKnown RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 NGFRP08138 427 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 SMIM18P0DKX4 95 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 PNMTP11086 282 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 PRG2P13727 222 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 CHMP24386 653 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 CRHBPP24387 322 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 TTKP33981 857 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 RFC3P40938 356 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 GSSP48637 474 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 RNF144AP50876 292 aaPredicted RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 APOFQ13790 326 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ALG10BQ5I7T1 473 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 WBP2NLQ6ICG8 309 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 RPL13AP3Q6NVV1 102 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 RASSF6Q6ZTQ3 369 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ZER1Q7Z7L7 766 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 CD163Q86VB7 1156 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 MISPQ8IVT2 679 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 NKAIN4Q8IVV8 208 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 NRMQ8IXM6 262 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 PRR22Q8IZ63 422 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 CYP4Z2PQ8N1L4 340 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 SVOPQ8N4V2 548 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ZNF540Q8NDQ6 660 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 OR52L1Q8NGH7 329 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ZNF563Q8TA94 476 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 CNIH3Q8TBE1 160 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 FBLIM1Q8WUP2 373 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 TMEM255BQ8WV15 326 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 IPCEF1Q8WWN9 437 aaPredicted RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 MYDGFQ969H8 173 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 ZNF566Q969W8 418 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 SCMH1Q96GD3 660 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms