RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 DYDC1Q8WWB3 177 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 ZC3HAV1LQ96H79 300 aaKnown RBP6.62□□□□□ -1.35
NUP88-205ENST00000572809 ITCHQ96J02 903 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 C7orf26Q96N11 449 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 OR5B2Q96R09 309 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 FOXC2Q99958 501 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 SLC38A1Q9H2H9 487 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 TPT1P8Q9HAU6 139 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 SLC6A13Q9NSD5 602 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 C6orf203Q9P0P8 240 aaPredicted RBP6.62□□□□□ -1.35
NUP88-205ENST00000572809 PLEKHA6Q9Y2H5 1048 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 TESMINQ9Y4I5 508 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 SPG11Q96JI7 2443 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 OTOGQ6ZRI0 2925 aa6.62□□□□□ -1.35
NUP88-205ENST00000572809 ANKRD17O75179 2603 aaKnown RBP6.62□□□□□ -1.35
NUP88-205ENST00000572809 IGHV3-15A0A0B4J1V0 119 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 FAM234BA2RU67 622 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 HMGB1P1B2RPK0 211 aaPredicted RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 SULT2B1O00204 365 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 POLR3GO15318 223 aaPredicted RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 BCAS1O75363 584 aaPredicted RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 RAF1P04049 648 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 DBIP07108 87 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 CHRM4P08173 479 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 TFPTP0C1Z6 253 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 TFPIP10646 304 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 ETFAP13804 333 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 PPP3CBP16298 524 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CRYGSP22914 178 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 AGTR1P30556 359 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 MAGEA8P43361 318 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 HTR3AP46098 478 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 IDH2P48735 452 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 CLK1P49759 484 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 DIO1P49895 249 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 MVDP53602 400 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 STX1BP61266 288 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 RASGEF1BQ0VAM2 473 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 KEAP1Q14145 624 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 TTMPQ5BVD1 217 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 C6orf10Q5SRN2 563 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 C3orf33Q6P1S2 294 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 STAC2Q6ZMT1 411 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 NUFIP2Q7Z417 695 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 GRINAQ7Z429 371 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 MTDHQ86UE4 582 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 ADGRG3Q86Y34 549 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CMIPQ8IY22 773 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 PEX5LQ8IYB4 626 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 FAM71CQ8NEG0 241 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 OR9I1Q8NGQ6 314 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CNOT9Q92600 299 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 VPS33AQ96AX1 596 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 PIK3IP1Q96FE7 263 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CCDC28BQ9BUN5 200 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CCDC106Q9BWC9 280 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CDADC1Q9BWV3 514 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 HDHD5Q9BXW7 423 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 CXXC4Q9H2H0 198 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 COQ10BQ9H8M1 238 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 SLCO1B3Q9NPD5 702 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 TCF7L2Q9NQB0 619 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 EXOSC3Q9NQT5 275 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 CTPS2Q9NRF8 586 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 INTS9Q9NV88 658 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 ARGLU1Q9NWB6 273 aaPredicted RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 THUMPD1Q9NXG2 353 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 CALML5Q9NZT1 146 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 KLHL13Q9P2N7 655 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 PRDM4Q9UKN5 801 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 GPR52Q9Y2T5 361 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 SPIN1Q9Y657 262 aaPredicted RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 ANKHD1Q8IWZ3 2542 aaKnown RBP6.61□□□□□ -1.35
NUP88-205ENST00000572809 CCDC168Q8NDH2 2452 aa6.61□□□□□ -1.35
NUP88-205ENST00000572809 A0A0G2JPF8 293 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 A0A1W2PPR1 153 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 TMEM247A6NEH6 219 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 CFAP73A6NFT4 308 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 DEFB108AA8MXU0 73 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 HNRNPCL2B2RXH8 293 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 HNRNPCL3B7ZW38 293 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 CLIC1O00299 241 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 GSTA4O15217 222 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 CYTIPO60759 359 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 HNRNPCL1O60812 293 aaKnown RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 HNRNPCL4P0DMR1 293 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 PSMB1P20618 241 aaKnown RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 CCKARP32238 428 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 MRPL19P49406 292 aaKnown RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 CRISP3P54108 245 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 AQP5P55064 265 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 DSTNP60981 165 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 CSNK2A1P68400 391 aaPredicted RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 RGNQ15493 299 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 MAPK11Q15759 364 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 DEFB113Q30KQ7 82 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 GTDC1Q4AE62 458 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 SYT14P1Q58G82 188 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 PAMR1Q6UXH9 720 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 FUNDC1Q8IVP5 155 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms