RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZNF724A8MTY0 619 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 SMAD9O15198 467 aaKnown RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 EIF1BO60739 113 aaKnown RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 SERPINB7O75635 380 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 PGM3O95394 542 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 RAF1P04049 648 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 GKN3PP0CG01 181 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 ETS2P15036 469 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 CD1EP15812 388 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 CRYGSP22914 178 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 GTF2E2P29084 291 aaKnown RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 PRKAR1BP31321 381 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 CCKARP32238 428 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 IDUAP35475 653 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 NR1H2P55055 460 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 NCALDP61601 193 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 NFYCQ13952 458 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 SCARB2Q14108 478 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 P2RY6Q15077 328 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 PDK3Q15120 406 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 MAPRE2Q15555 327 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 MAPK11Q15759 364 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 CYP51A1Q16850 503 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 MMEL1Q495T6 779 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 BEX5Q5H9J7 111 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 NKAPLQ5M9Q1 402 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 ANKRD34AQ69YU3 496 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 REEP3Q6NUK4 255 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 PAMR1Q6UXH9 720 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 TFAP2EQ6VUC0 442 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 STAC2Q6ZMT1 411 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 NUFIP2Q7Z417 695 aaKnown RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 ADGRG3Q86Y34 549 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 WFDC8Q8IUA0 241 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 ZNF100Q8IYN0 542 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 BHLHE22Q8NFJ8 381 aaPredicted RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 NRGNQ92686 78 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 KISS1RQ969F8 398 aaPredicted RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 SLC35B4Q969S0 331 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 ZNF524Q96C55 264 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 DNAJA3Q96EY1 480 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 DOCK7Q96N67 2140 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 ZNF607Q96SK3 696 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 TAPBPLQ9BX59 468 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 OR11A1Q9GZK7 315 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 NGBQ9NPG2 151 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 SLC25A37Q9NYZ2 338 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 SELENONQ9NZV5 590 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 VAPAQ9P0L0 249 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 C6orf203Q9P0P8 240 aaPredicted RBP7.2□□□□□ -1.26
VPS53-214ENST00000572607 SLAMF8Q9P0V8 285 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 OSGIN1Q9UJX0 560 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 TRAPPC4Q9Y296 219 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 PLEKHA6Q9Y2H5 1048 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 ABCA2Q9BZC7 2435 aa7.2□□□□□ -1.26
VPS53-214ENST00000572607 A8MVM7 634 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 ADAM11O75078 769 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 ADAP00813 363 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 GPIP06744 558 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 HOXB9P17482 250 aaPredicted RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 GPX2P18283 190 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 PSMB1P20618 241 aaKnown RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 FPR1P21462 350 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 OR3A2P47893 321 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 IST1P53990 364 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 PLAURQ03405 335 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 RBBP4Q09028 425 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 CYLC2Q14093 348 aaPredicted RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 RUNDC3AQ59EK9 446 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 SFRP5Q5T4F7 317 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 ABLIM2Q6H8Q1 611 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 ALKBH2Q6NS38 261 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 CXorf67Q86X51 503 aaPredicted RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 SLC30A8Q8IWU4 369 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 MSRB3Q8IXL7 192 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 UBE2J2Q8N2K1 259 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 CLIP4Q8N3C7 705 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 DPP10Q8N608 796 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 C11orf65Q8NCR3 313 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 HIPK4Q8NE63 616 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 APH1AQ96BI3 265 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 ARL5BQ96KC2 179 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 ZNF300Q96RE9 604 aaPredicted RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 CGREF1Q99674 301 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 FOXC2Q99958 501 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 SH3GL1Q99961 368 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 POTEKPQ9BYX7 375 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 TMEM38AQ9H6F2 299 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 EVA1AQ9H8M9 152 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 CCM2LQ9NUG4 571 aaPredicted RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 FGFR1OP2Q9NVK5 253 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 PARPBPQ9NWS1 579 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 SLC9A8Q9Y2E8 581 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 NOSIPQ9Y314 301 aaKnown RBP7.19□□□□□ -1.26
VPS53-214ENST00000572607 GMEB1Q9Y692 573 aa7.19□□□□□ -1.26
VPS53-214ENST00000572607 IGKV3D-15A0A087WSY6 115 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 TRBV5-3A0A0A0MS03 114 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 BBIP1A8MTZ0 92 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 DEFB108AA8MXU0 73 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 FRS3O43559 492 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms